Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq112114 163 3e-35 >seq112114 Length=2115 Score = 163 bits (180), Expect = 3e-35 Identities = 178/231 (77%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | ||||| || || ||| ||||||||| ||||| |||||||| Sbjct 1751 GCCTCCGCGCAGCCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1692 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGG 41753 | |||||| | || |||||||||||||||||||| ||||| || || ||||| |||| Sbjct 1691 CAAGGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGCGG 1632 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 || | | |||||||||| ||| | || || | ||| | | |||||||||| |||| Sbjct 1631 GATC-CCCTCCTTGTCC-TGAATCTTGGCCTTCACGTTTTCAATCGTGTCGCTCGGCTCC 1574 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| | ||| || ||||| || ||||| || || ||||| ||||||||| Sbjct 1573 ACCTCGAGCGTGATGGTTTTCCCGGTCAGGGTTTTGACGAAGATCTGCATG 1523 Score = 159 bits (176), Expect = 3e-34 Identities = 175/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | ||||| || || ||| ||| ||||| ||||| ||||| || Sbjct 1979 GCCACCGCGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGA 1920 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| |||| ||||| |||||||||||||| || || ||||| || |||| ||| Sbjct 1919 CAGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGG 1860 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | ||||||||| || |||| || | ||| | | |||||||||| ||| | Sbjct 1859 AATCCCTTCCTTGTCC-TGGATTTTGGCCTTGACGTTTTCGATGGTGTCGCTCGGCTCAA 1801 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | ||| ||||| || || || || ||||| ||||| ||||||||| Sbjct 1800 CCTCGAGCGTGATCGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATG 1751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461122142939200