Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq297272 89.7 5e-13 >seq297272 Length=244611 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 ||||||| | ||||| || ||||| || || | |||||||| ||| || |||| Sbjct 163573 CCTCGTCCCGACTGATGAGCTCGTTGCTGAAGGTGAGGCCGGGCATGAGTCCCCGCTTCT 163514 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| || || | |||||||| || || ||||| || |||||||||| |||||||| Sbjct 163513 TCAGCCAGAAGATGGATGCGAACGATCCCGAGAAGAAGATGCCCTCGACGGCTGCAAACG 163454 Query 17106 CGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGG 17165 ||| | || ||| | | || ||| ||| | ||||| || | |||| || | Sbjct 163453 CGACGATGCGCTCGCCAAATGTGGCGCTGCGGTTGCTGATCCAGTTTAGTGCCCAGTCCG 163394 Query 17166 CTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATA 17207 | || ||| ||||| |||||| || | ||| || |||| Sbjct 163393 CCTTCCTCTTAATGCAGGGCATCGTCTCAACGGCGTTGAATA 163352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515155238014560