Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq16628 145 6e-30 seq8286 145 6e-30 seq247634 87.8 1e-12 seq275423 82.4 6e-11 >seq16628 Length=231947 Score = 145 bits (160), Expect = 6e-30 Identities = 477/730 (65%), Gaps = 20/730 (3%) Strand=Plus/Minus Query 18618 CCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAGTTGTTATGGTTT 18677 ||| | ||||| || || || ||||||||| | | || |||||||| | | |||||| Sbjct 231157 CCTTTATTAACAACCAAACGCGTTTTTTGGCGAGGAGTTGTGGAAGAACTTCTCTGGTTT 231098 Query 18678 ATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATATACACATATGGGATATA 18737 ||||||| || |||||| |||||||| | | | | ||| ||||||||||| | Sbjct 231097 CTCCGCGGATCTACCGATGCCAAAGAATTGTCAGAACGTGGTATTCACATATGGGACCAA 231038 Query 18738 TACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGACACACGGGGGACCTT 18797 |||| || | |||||| |||| || || | | || | ||||| ||| Sbjct 231037 AACGGTTCTCGTCGATTTCTCGATAGCTTAGGTTTTTTTGATCGAGAAGAAGGGGATCTT 230978 Query 18798 GGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCAATCA 18857 || || | ||||| || || ||| | ||||||||||| |||| | ||| || || Sbjct 230977 GGACCGGTCTACGGATTTCAATGGCGTCATTTTGGAGCCACCTATAGAAACTCGCACACA 230918 Query 18858 AACTATTTACAGCAAGGAATCGATC-AGCTGCAA-ACTGTTATAGATACAATTAAAACAA 18915 ||||| | | |||| | |||| | | ||| ||| | | || || |||| | Sbjct 230917 GACTATGGAAACGAAGGTGTTGATCAAATTACAAGACTCGTTGAAAT-CATCAAAAATGA 230859 Query 18916 ACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGG 18975 |||| | ||| |||||||| ||| || |||||||||| ||||| ||||| Sbjct 230858 TCCCA-ACGACCGCCGAATGATATTATGTTCGTGGAATCCAACAGATATTAAGAAAATGG 230800 Query 18976 TACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCC 19035 | ||||| ||||||||| || ||||| ||||| | | | ||| | || || | Sbjct 230799 TCCTACCACCATGTCACTGTTTGGCACAGTTCTACGTAGACGATGATGAGCTCTCGTGTC 230740 Query 19036 AAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATG 19095 || | || ||| | || | |||||||| | || |||||||| |||||||| | || | Sbjct 230739 AATTGTATCAGCGTTCTGCCGATATGGGATTGGGTGTACCGTTTAACATTGCGAGTTACG 230680 Query 19096 CACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAA--ACC-GGAGATTTAATTC 19152 | ||||| || |||| | || | || || ||| ||| ||| || || || ||| Sbjct 230679 CTCTTCTCACACACATGATGGCAAAGGTGACTGGA---AAACGACCTGGTGAATTTGTTC 230623 Query 19153 ATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAGCTAG 19212 | | | || ||||| || |||||| | || || | || | | || || ||| Sbjct 230622 ACAATTTAGGCGATGCCCACATTTACCTTAACCACGTGGAGTCCGTCAAGCAACAATTAG 230563 Query 19213 CTCGATCCCCAAAACCTTTTCC----TTGCCTTAAAATTATTCGAAATGTAACAGATATA 19268 || || ||||||||| |||| || | ||| | || || ||||| Sbjct 230562 AACGGGAACCGCGACCTTTTCCGAAATTGC----GCATCAGGCGAGACGTGACTGATATT 230507 Query 19269 AACGACTTTAAATGGGACGATTTTCAGCTTGATGGA-TATAATCCACAccccccccTAAA 19327 |||||| ||| || |||||| || ||||| || ||||||||| |||| |||| Sbjct 230506 TTTGACTTTCGATGTGATGATTTTGAG-TTGATCGATTATAATCCATACCCAAAAATAAA 230448 Query 19328 AATGGAAATG 19337 |||||| ||| Sbjct 230447 AATGGAGATG 230438 >seq8286 Length=1257 Score = 145 bits (160), Expect = 6e-30 Identities = 477/730 (65%), Gaps = 20/730 (3%) Strand=Plus/Minus Query 18618 CCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAGTTGTTATGGTTT 18677 ||| | ||||| || || || ||||||||| | | || |||||||| | | |||||| Sbjct 1011 CCTTTATTAACAACCAAACGCGTTTTTTGGCGAGGAGTTGTGGAAGAACTTCTCTGGTTT 952 Query 18678 ATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATATACACATATGGGATATA 18737 ||||||| || |||||| |||||||| | | | | ||| ||||||||||| | Sbjct 951 CTCCGCGGATCTACCGATGCCAAAGAATTGTCAGAACGTGGTATTCACATATGGGACCAA 892 Query 18738 TACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGACACACGGGGGACCTT 18797 |||| || | |||||| |||| || || | | || | ||||| ||| Sbjct 891 AACGGTTCTCGTCGATTTCTCGATAGCTTAGGTTTTTTTGATCGAGAAGAAGGGGATCTT 832 Query 18798 GGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCAATCA 18857 || || | ||||| ||||| ||| | ||||||||||| |||| | ||| || || Sbjct 831 GGACCGGTCTACGGATTCCAATGGCGTCATTTTGGAGCCACCTATAGAAACTCGCACACA 772 Query 18858 AACTATTTACAGCAAGGAATCGATC-AGCTGCAA-ACTGTTATAGATACAATTAAAACAA 18915 ||||| | | |||| | |||| | | ||| ||| | | || || |||| | Sbjct 771 GACTATGGAAACGAAGGTGTTGATCAAATTACAAGACTCGTTGAAAT-CATCAAAAATGA 713 Query 18916 ACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGG 18975 |||| | ||| |||||||| ||| || |||||||||| ||||| ||||| Sbjct 712 TCCCA-ACGACCGCCGAATGATATTATGTTCGTGGAATCCAACAGATATTAAGAAAATGG 654 Query 18976 TACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCC 19035 | ||||| ||||||||| || ||||| ||||| | | | ||| | || || | Sbjct 653 TCCTACCACCATGTCACTGTTTGGCACAGTTCTACGTAGACGATGATGAGCTCTCGTGTC 594 Query 19036 AAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATG 19095 || | || ||| | || | || ||||| | || |||||||| |||||||| | || | Sbjct 593 AACTGTATCAGCGTTCTGCCGACATGGGATTGGGTGTACCGTTTAACATTGCGAGTTACG 534 Query 19096 CACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAA--ACC-GGAGATTTAATTC 19152 | ||||| || |||| | || | || || ||| ||| ||| || || || ||| Sbjct 533 CTCTTCTCACACACATGATGGCAAAGGTGACTGGA---AAACGACCTGGTGAATTTGTTC 477 Query 19153 ATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAGCTAG 19212 | | | || ||||| || |||||| | || || | || | | || || ||| Sbjct 476 ACAATTTAGGCGATGCCCACATTTACCTTAACCACGTGGAGTCCGTCAAGCAACAATTAG 417 Query 19213 CTCGATCCCCAAAACCTTTTCC----TTGCCTTAAAATTATTCGAAATGTAACAGATATA 19268 || || ||||||||| |||| || | ||| | || || ||||| Sbjct 416 AACGGGAACCGCGACCTTTTCCGAAATTGC----GCATCAGGCGAGACGTGACTGATATT 361 Query 19269 AACGACTTTAAATGGGACGATTTTCAGCTTGATGGA-TATAATCCACAccccccccTAAA 19327 |||||| ||| || |||||| || ||||| || ||||||||| |||| |||| Sbjct 360 TTTGACTTTCGATGTGATGATTTTGAG-TTGATCGATTATAATCCATACCCAAAAATAAA 302 Query 19328 AATGGAAATG 19337 |||||| ||| Sbjct 301 AATGGAGATG 292 >seq247634 Length=1103 Score = 87.8 bits (96), Expect = 1e-12 Identities = 167/246 (68%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 18618 CCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAGTTGTTATGGTTT 18677 ||| | ||||| || || || ||||||||| | | || |||||||| | | |||||| Sbjct 791 CCTTTATTAACAACCAAACGCGTTTTTTGGCGAGGAGTTGTGGAAGAACTTCTCTGGTTT 850 Query 18678 ATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATATACACATATGGGATATA 18737 ||||||| || |||||| |||||||| | | | | ||| ||||||||||| | Sbjct 851 CTCCGCGGATCTACCGATGCCAAAGAATTGTCAGAACGTGGTATTCACATATGGGACCAA 910 Query 18738 TACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGACACACGGGGGACCTT 18797 |||| || | |||||| |||| || || | | || | ||||| ||| Sbjct 911 AACGGTTCTCGTCGATTTCTCGATAGCTTAGGTTTTTTTGATCGAGAAGAAGGGGATCTT 970 Query 18798 GGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCAATCA 18857 || || | ||||| ||||| ||| | ||||||||||| |||| | ||| || || Sbjct 971 GGACCGGTCTACGGATTCCAATGGCGTCATTTTGGAGCCACCTATAGAAACTCGCACACA 1030 Query 18858 AACTAT 18863 ||||| Sbjct 1031 GACTAT 1036 >seq275423 Length=1030 Score = 82.4 bits (90), Expect = 6e-11 Identities = 163/240 (68%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 18625 TAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAGTTGTTATGGTTTATCCGCG 18684 |||| || || || ||||||||| | | || |||||||| | | |||||| |||||| Sbjct 743 TAACAACCAAACGCGTTTTTTGGCGAGGAGTTGTGGAAGAACTTCTCTGGTTTCTCCGCG 802 Query 18685 GGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATATACACATATGGGATATATACGGAT 18744 | || |||||| |||||||| | | | | ||| ||||||||||| | |||| | Sbjct 803 GATCTACCGATGCCAAAGAATTGTCAGAACGTGGTATTCACATATGGGACCAAAACGGTT 862 Query 18745 CGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGA-CACACGGGGGACCTTGGCCCC 18803 | | |||||| |||| || || | | || | | ||||| ||||| || Sbjct 863 CTCGTCGATTTCTCGATAGCTTAGGTTTTTTTGATCGAGAAGAAAGGGGATCTTGGACCG 922 Query 18804 ATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCAATCAAACTAT 18863 | ||||| ||||| ||| | ||||||||||| |||| | ||| || || ||||| Sbjct 923 GTCTACGGATTCCAATGGCGTCATTTTGGAGCCACCTATAGAAACTCGCACACAGACTAT 982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397704960079140