Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq16628 178 9e-40 seq8286 172 4e-38 seq247634 122 6e-23 seq275423 113 3e-20 >seq16628 Length=231947 Score = 178 bits (196), Expect = 9e-40 Identities = 383/561 (68%), Gaps = 14/561 (2%) Strand=Plus/Plus Query 101702 TAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATT---AGTGACA 101758 || ||||| ||||| |||| | | || | ||| || ||||| | | || ||| || Sbjct 230598 TAAATGTGGGCATCGCCTAAATTGTGAACAAATTCACCAGG---TCGTTTTCCAGTCACC 230654 Query 101759 TGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCC 101818 | || |||||| || | ||||| || || ||||||||||| || || || || ||| Sbjct 230655 TTTGCCATCATGTGTGTGAGAAGAGCGTAACTCGCAATGTTAAACGGTACACCCAATCCC 230714 Query 101819 ATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGA 101878 ||||| || || | ||||||| |||||| || |||| |||| || || || || Sbjct 230715 ATATCGGCAGAACGCTGATACAATTGACACGAGAGCTCATCATCGTCTACGTAGAACTGT 230774 Query 101879 CTTAATACA-TGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACA 101937 || ||| ||||| || || | |||||||| ||| |||| |||||| | ||| Sbjct 230775 GCCAA-ACAGTGACATGGTGGTAGGACCATTTTCTTAATATCTGTTGGATTCCACGAACA 230833 Query 101938 CATTAACATCCTTCTATCTGTAGGGTTTGTTTTT-ATAGTATCAATCAACTGTTTTAATT 101996 | || ||| | | || || ||| | ||||| || | |||| | | | || ||||| Sbjct 230834 TAATATCATTCGGCGGTC-GTTGGGATCATTTTTGATGATTTCAA-CGAGTCTTGTAATT 230891 Query 101997 GG-TCAACTCCTTCTCCTTTATAATC-GCGCCCAACACCTTTATATTCTGCTCCGAAATG 102054 | ||||| ||||| | ||| || | | | | | |||| ||||| ||||| Sbjct 230892 TGATCAACACCTTCGTTTCCATAGTCTGTGTGCGAGTT-TCTATAGGTGGCTCCAAAATG 230950 Query 102055 CCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAG 102114 | ||| |||||||| || || ||||||||||| ||||| |||| ||| ||||||| | Sbjct 230951 ACGCCATTGAAATCCGTAGACCGGTCCAAGATCCCCTTCTTCTCGATCAAAAAAACCTAA 231010 Query 102115 TTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAG 102174 |||| | |||| | ||| || || ||||| ||||| | ||| | |||| | Sbjct 231011 GCTATCGAGAAATCGACGAGAACCGTTTTGGTCCCATATGTGAATACCACGTTCTGACAA 231070 Query 102175 CTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCA 102234 |||||| || |||||||| | || |||||| | |||||||| ||||| |||| ||| Sbjct 231071 TTCTTTGGCATCGGTAGATCCGCGGAGAAACCAGAGAAGTTCTTCCACAACTCCTCGCCA 231130 Query 102235 AAATACTCTCTTAGTAGTTAA 102255 ||| || | || || ||||| Sbjct 231131 AAAAACGCGTTTGGTTGTTAA 231151 >seq8286 Length=1257 Score = 172 bits (190), Expect = 4e-38 Identities = 382/561 (68%), Gaps = 14/561 (2%) Strand=Plus/Plus Query 101702 TAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATT---AGTGACA 101758 || ||||| ||||| |||| | | || | ||| || ||||| | | || ||| || Sbjct 452 TAAATGTGGGCATCGCCTAAATTGTGAACAAATTCACCAGG---TCGTTTTCCAGTCACC 508 Query 101759 TGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCC 101818 | || |||||| || | ||||| || || ||||||||||| || || || || ||| Sbjct 509 TTTGCCATCATGTGTGTGAGAAGAGCGTAACTCGCAATGTTAAACGGTACACCCAATCCC 568 Query 101819 ATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGA 101878 || || || || | |||||||||||||| || |||| |||| || || || || Sbjct 569 ATGTCGGCAGAACGCTGATACAGTTGACACGAGAGCTCATCATCGTCTACGTAGAACTGT 628 Query 101879 CTTAATACA-TGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACA 101937 || ||| ||||| || || | |||||||| ||| |||| |||||| | ||| Sbjct 629 GCCAA-ACAGTGACATGGTGGTAGGACCATTTTCTTAATATCTGTTGGATTCCACGAACA 687 Query 101938 CATTAACATCCTTCTATCTGTAGGGTTTGTTTTT-ATAGTATCAATCAACTGTTTTAATT 101996 | || ||| | | || || ||| | ||||| || | |||| | | | || ||||| Sbjct 688 TAATATCATTCGGCGGTC-GTTGGGATCATTTTTGATGATTTCAA-CGAGTCTTGTAATT 745 Query 101997 GG-TCAACTCCTTCTCCTTTATAATC-GCGCCCAACACCTTTATATTCTGCTCCGAAATG 102054 | ||||| ||||| | ||| || | | | | | |||| ||||| ||||| Sbjct 746 TGATCAACACCTTCGTTTCCATAGTCTGTGTGCGAGTT-TCTATAGGTGGCTCCAAAATG 804 Query 102055 CCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAG 102114 | ||| || ||||| || || ||||||||||| ||||| |||| ||| ||||||| | Sbjct 805 ACGCCATTGGAATCCGTAGACCGGTCCAAGATCCCCTTCTTCTCGATCAAAAAAACCTAA 864 Query 102115 TTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAG 102174 |||| | |||| | ||| || || ||||| ||||| | ||| | |||| | Sbjct 865 GCTATCGAGAAATCGACGAGAACCGTTTTGGTCCCATATGTGAATACCACGTTCTGACAA 924 Query 102175 CTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCA 102234 |||||| || |||||||| | || |||||| | |||||||| ||||| |||| ||| Sbjct 925 TTCTTTGGCATCGGTAGATCCGCGGAGAAACCAGAGAAGTTCTTCCACAACTCCTCGCCA 984 Query 102235 AAATACTCTCTTAGTAGTTAA 102255 ||| || | || || ||||| Sbjct 985 AAAAACGCGTTTGGTTGTTAA 1005 >seq247634 Length=1103 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 102044 GCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCA 102103 ||||| ||||| | ||| || ||||| || || ||||||||||| ||||| |||| ||| Sbjct 1008 GCTCCAAAATGACGCCATTGGAATCCGTAGACCGGTCCAAGATCCCCTTCTTCTCGATCA 949 Query 102104 TAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCA 102163 ||||||| | |||| | |||| | ||| || || ||||| ||||| | ||| Sbjct 948 AAAAAACCTAAGCTATCGAGAAATCGACGAGAACCGTTTTGGTCCCATATGTGAATACCA 889 Query 102164 GCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACA 102223 | |||| | |||||| || |||||||| | || |||||| | |||||||| ||| Sbjct 888 CGTTCTGACAATTCTTTGGCATCGGTAGATCCGCGGAGAAACCAGAGAAGTTCTTCCACA 829 Query 102224 ACACCTCTCCAAAATACTCTCTTAGTAGTTAA 102255 || |||| |||||| || | || || ||||| Sbjct 828 ACTCCTCGCCAAAAAACGCGTTTGGTTGTTAA 797 >seq275423 Length=1030 Score = 113 bits (124), Expect = 3e-20 Identities = 153/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 102044 GCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCC-TTCATCTCTGTC 102102 ||||| ||||| | ||| || ||||| || || ||||||||||| || ||| |||| || Sbjct 954 GCTCCAAAATGACGCCATTGGAATCCGTAGACCGGTCCAAGATCCCCTTTCTTCTCGATC 895 Query 102103 ATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCC 102162 | ||||||| | |||| | |||| | ||| || || ||||| ||||| | || Sbjct 894 AAAAAAACCTAAGCTATCGAGAAATCGACGAGAACCGTTTTGGTCCCATATGTGAATACC 835 Query 102163 AGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAAC 102222 | | |||| | |||||| || |||||||| | || |||||| | |||||||| || Sbjct 834 ACGTTCTGACAATTCTTTGGCATCGGTAGATCCGCGGAGAAACCAGAGAAGTTCTTCCAC 775 Query 102223 AACACCTCTCCAAAATACTCTCTTAGTAGTTA 102254 ||| |||| |||||| || | || || |||| Sbjct 774 AACTCCTCGCCAAAAAACGCGTTTGGTTGTTA 743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359624419466492