Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq16628 607 1e-168 >seq16628 Length=231947 Score = 607 bits (672), Expect = 1e-168 Identities = 1501/2267 (66%), Gaps = 24/2267 (1%) Strand=Plus/Plus Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858 ||||||| ||| ||||| |||| | || ||||| || |||| ||| |||||||| Sbjct 198615 TTGTCCACTGTAAATTGGATGGCATTTACAGCAGGTTTGGTTCGTAAATAATACATTCCA 198674 Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918 ||||| || || || |||| || |||||||||||||||| ||||| ||| | || Sbjct 198675 GTTTTCAGTCCAAGTTTCCAACCACAAAAATGCATACTTGTAAGTTTTCCATACGTTGGC 198734 Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978 | || || || ||||||| ||||||||||| || | ||| ||||| | ||||| | | Sbjct 198735 TGAGCGATGTGTATATTCAGTGATTGACTTTGGTCCACGAAAGCTCCGCGATCTGCCGAC 198794 Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 53037 |||| | || |||| || | ||||||||| | ||| ||| ||| ||||| || Sbjct 198795 ATTTCCAAAATATTCTTCTGAGAAATTTCCCACACAGTGCGATACAACATTTTTAAT-TC 198853 Query 53038 TTCTGGAAGGTTTGTATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTC 53097 || || | || || |||| ||| ||| | | || | ||| || | | Sbjct 198854 TTTAGGTATATTCAGCTTTTGAACAGAACCATTGTTAGCAATCAGTTCATTTTTTAAGTT 198913 Query 53098 ATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAA 53157 || |||||||| || ||| || | | |||||| |||| |||| ||||| Sbjct 198914 GTCGTTCCATAAACCGAGACGCGTCAAATCTTTCAAGAGATGGTGATTTACTATCTGAAA 198973 Query 53158 TTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATT 53217 ||||||||| | ||| | |||||| || | ||| || || || ||||||| | ||| || Sbjct 198974 TTCTCCAGAAAGTACGCGCCGAGTATACACATTGCTAGTGTATGGTTCCATTGCCTCGTT 199033 Query 53218 ATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCT 53277 ||| || | ||| || ||||| ||||| || ||||| ||||| || | | |||||| | Sbjct 199034 ATTACCAAGAATCTGCGCAGTAGATGCTGTTGGCATTGGTGCTACGAGAAGACTATTGCG 199093 Query 53278 AAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTAC 53337 | || | || | ||| | ||||||| || ||||| ||| || | || ||| Sbjct 199094 GATTCCAAAGCTTTTAATTCTTTCTTTTAAAGCAGACCAATCCCACAGGTTTGAAGGTGT 199153 Query 53338 AACNNNNNNNNNNNNNNNTTGTAGAATACCGT----TACTGGCGTACGATCCTACATATG 53393 || || || || || | |||||| ||| | ||| | Sbjct 199154 TACATTCCACATATCGTACTGAAGGATTCCTTGTGATACTGGACTACCAGGGTAC----G 199209 Query 53394 TATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAA 53453 | ||||| || || ||| | || |||||||||||| | || || || || ||||| | Sbjct 199210 TCTCGTACGGACCAAACTTTTTAGACAGTTCACAACTCTCTTCCAAAGCTCCATAATATA 199269 Query 53454 TGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTA 53513 | ||||| ||||| |||||||| | || ||||| | || || ||| ||| Sbjct 199270 TTGTTTCAAAGATTTTCTTATTAATTTCACAAGCTTCGTCACAGTCGAAAGGAAGTCTTA 199329 Query 53514 AGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 53573 | | ||| || ||||| || || ||||| || || || || ||||| | ||| | | | | Sbjct 199330 ATAAAATGAAAGCGTCGGCCAAACCTTGGACTCCGATTCCAATAGGGCGATGCCGCATGT 199389 Query 53574 TAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTC 53633 | || | || ||||| ||||| ||||||||||||| ||| || |||||||| | ||||| Sbjct 199390 TTGAAAGTTTCGCTTCGGGAATTGGATAATAATTAACATCGATTATTTTATTCAAGTTTC 199449 Query 53634 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTATTACAA 53693 | | ||| | || | || ||| |||||| || ||||||| || | Sbjct 199450 TAGTTACGACTCTAGTTACTTGACGCAATTTTTCAAAATCGAAGTGTCCATGATAAACGA 199509 Query 53694 ACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 53753 | ||||| ||||| || || | |||||| ||||| ||||| | | | || || | Sbjct 199510 ATCGATTCAAAGCAATCGACGCTAAATTACACACGGCAACCTCGTCAACGGACGTGTACT 199569 Query 53754 GTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCT 53813 || || || || || ||||||||||| || || || || | |||| |||||| | Sbjct 199570 CTACGATTTCGGTACATAGATTACTACATTTTATTGTACCGACGTTTTTTTGATTCGATT 199629 Query 53814 TTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTA 53873 || | || || || || || || | || |||||||||||||||| | || ||||| | Sbjct 199630 TTCTATTGCAGGCGTCTTTGTATAACATATATGGCGTACCAGTTTCCGTTTGTGATTCGA 199689 Query 53874 TAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTC--TTTC 53931 |||| || |||||| | || | | || || | |||||| | || Sbjct 199690 TAATTGCACTCCAGAGTTGTTGTGCACGAACTT--GACGCCGATAACGTTTCTCCGTCTC 199747 Query 53932 GTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTC 53991 |||| | || | | ||| || || || || | |||| | || ||||| ||| Sbjct 199748 GTATCGAACGTAAAGTTTTTCGAAGTCTTCGCCGTATACATCTTGCAGGTGAGGACTTTC 199807 Query 53992 ATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGG 54051 | ||||||||||||||||| ||| || || | ||| | |||||| || | ||| || Sbjct 199808 GTGTGGACACATCAACGACCATATTCCATCTTCTTCCACCCTTTTCATGAATAAATCGGG 199867 Query 54052 AATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 54111 |||||| | | | ||| ||||| | | ||| || || || || ||||| ||||| Sbjct 199868 AATCCACAAACCGTAAAAAAGATCACGTGCCCTACTCTCTTCTTTACCGGTATTTTTTTT 199927 Query 54112 AAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCC 54171 ||||| | || | | | ||| | ||||||||||||| || |||| || |||| Sbjct 199928 TAGATCCAAAAAATCGAACACATCTGCGTGCCACGGTTCCAGATAGATGGCGATCGCTCC 199987 Query 54172 AGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 54231 || | |||||| || |||||||| | ||| | || ||||| ||||| |||| | ||| Sbjct 199988 CGGTCTTTTGTTGCCACCCTGATCGACGTAACGTGCCGTGTTGTTATACACTCGTAGCAT 200047 Query 54232 TGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT 54291 || | |||||| || |||| |||||| || || | || || |||||| |||||||| Sbjct 200048 GGGTACAATACCGTTCGATGTACCATTTGTTCCTGCTATGTAACTTCCAGAAGCACGAAT 200107 Query 54292 ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 54351 || || | ||||| || || ||| ||| || || | ||| || |||| | Sbjct 200108 GTTGTGTATGTTAATTCCTATTCCACCAGCCGATTTTGAAATGAGTGCACACTGTTTCAG 200167 Query 54352 CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACAT 54411 ||||| || || || ||||| ||||| || |||| | | || |||||| || |||| Sbjct 200168 TGTATCGTATATTCCTTCTATGCTATCGTCTTTCATTTGCAATAAAAAACAACTCGACAG 200227 Query 54412 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 54471 ||| | | ||| || || || || | || ||||| || ||||||||||||||||| Sbjct 200228 TTGCGGTTTAGGAGTCCCAGCGTTGAAAAGTGTGGGAGATGCTTGCGTAAACCATTTTTC 200287 Query 54472 AGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGC 54531 ||| | || |||||||| || || || | | ||| ||||| || | | Sbjct 200288 AGACATGAGGTTGTACGTTTCAATCGCACTGCTAAGATCGTCCCCGTGAATGCCAATCGA 200347 Query 54532 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTA 54591 || ||||| | |||||| || || | || || | || || || || || || | Sbjct 200348 AACGCGCATAAGCATGTGTTGTGGCCGCTCTACAACTTTCCCATTAATCTTGAGTAAATG 200407 Query 54592 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATA 54649 | |||||| || ||||| ||||| ||||| || ||||| || || ||||||| Sbjct 200408 CGCACGTTCCAATGTCTTAAATCCAAAGTAGTTATAATTGAAA--TCGCGATCGTAAACG 200465 Query 54650 ATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTA-CATCCATGGTAATACTTGAAAT 54708 || ||||| | ||| || || |||| | | | ||| | | | ||| Sbjct 200466 ATGGACGAGTTTAAAAAATCTGCATTATTCATAACGATCTTATATGTTTCTTC-GCTAAT 200524 Query 54709 AATCGGAGAATGTTTCCCATTTTTAGGATTGA-CATAGTTAAATAAATCCTTCATCACTT 54767 || || | | ||| || || | ||| | |||| | | ||||||| ||||||| | Sbjct 200525 CATGGGCGTAGATTTTCCGTTAGTTTCATTTACCATA-TGATATAAATCAGTCATCACCT 200583 Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 | ||||| | ||||| ||||||||||||| ||| || | ||| | || || ||||||| Sbjct 200584 CGCTAAAAACCTTTTTCGTTTCTTTGTGTAAATTAGAAATGGCGAGTCGCGCTGCTAGAA 200643 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || |||| ||||| || || || |||| |||| | | | |||| Sbjct 200644 TGGCATAGTCTGGGTGTTTCGTAGTCATCGTTGCAGCAGTTTCTGCTGCTAAATTATCCA 200703 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATA- 54946 ||| || || ||||| || ||||| ||| ||| | ||| | | || || | | Sbjct 200704 GTTCCACTGTCGTTACGCCTGGATATAATCCGACGATCA-CTTTTTGGGTAATTACACAG 200762 Query 54947 GGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTGATTTTA 55006 ||||||| ||| ||||| | |||||||| | ||| ||||| ||||| || ||||| Sbjct 200763 GGATCTACGAAATCTGTGTTCAGCCCATAACAAAGTTTACTAATGCGAGACGTTATTTTG 200822 Query 55007 TCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGACAAACAT 55053 || || || | |||| | |||||| || || | |||||||| Sbjct 200823 TCGAAGTGGATACTTTCGTGTCTTCCATTCCGCTTGACCACAAACAT 200869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590979407732160