Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq329878 125 8e-24 >seq329878 Length=295997 Score = 125 bits (138), Expect = 8e-24 Identities = 109/133 (82%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 145690 TCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCG 145749 ||||||||||||||||||| ||| |||||||||||| ||| | |||||||||||| || Sbjct 113618 TCCACGTGGTTGAGGTAGATGTGGGCGTCCCCCAGGGTGTGCACAAAGTCCCCGGGC-CG 113560 Query 145750 AGGCCC-GTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGG 145808 ||| || | | ||| ||||||| |||||| |||| ||||||||| |||||||| || Sbjct 113559 TTTCCCGGTCACCTTGGCCACCATGTGGGTCAGGAGGGCGTAGCTGGCAATGTTGAAAGG 113500 Query 145809 CACCCCCAGCCCC 145821 ||| ||||| ||| Sbjct 113499 CACGCCCAGGCCC 113487 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 146125 AGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTG 146184 ||||| | ||||| |||||| | |||||||| ||||| | | | || ||||| ||| Sbjct 89052 AGGAACTGGCGGGAGCCGTTGCCATCCCAGATGCGAACGCCACGCTCAGACAGCTCCTTG 88993 Query 146185 GAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACC 146244 | || || ||||||| | |||||||||||||||||| | ||||| | |||||||||| Sbjct 88992 GCGTTGGTTGACCCCCGAAGGAACCAGAGCAGCTCTTCCACAACCCCTCGCCAGAAGACC 88933 Query 146245 CTCTTGGTGGTCAGCA 146260 | |||||| ||||||| Sbjct 88932 CGCTTGGTCGTCAGCA 88917 Score = 84.2 bits (92), Expect = 3e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 145820 CCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACT 145879 ||||||| | ||||||||||||| ||||||||||||||| | | ||||||||||| Sbjct 108190 CCATGTCAGCAGAGCGCTGGTACAACTGGCAGGAGAGCTCATCCTCGTACACGTAGAACT 108131 Query 145880 GGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 | |||| |||||| || ||||||||||| Sbjct 108130 GTGCCAGGCAGTGGCACGGAGGCAGGGCCAT 108100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587351441787680