Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq118272 134 1e-26 seq368444 84.2 2e-11 >seq118272 Length=246527 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || |||| || |||| || | ||||| || || || ||||| ||||||| Sbjct 51236 TTCCACCGCGGAGCCGCAGAACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCCG 51177 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 |||||| | ||||||| ||||| ||||| ||| | || || | ||| |||||| | Sbjct 51176 ACAGGGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGAG 51117 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| |||||| |||||| | ||| || |||| |||||| Sbjct 51116 GAATCCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTTTCGATGGTGTCACTGGGCTCGA 51057 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||||||||||||||| | ||||| ||||| |||||||| Sbjct 51056 CCTCGAGAGTAATGGTCTTGCCGGTCAGAGTTTTTACAAAAATTTGCAT 51008 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | |||||||| || || ||||| ||||| | ||| || || ||||| Sbjct 50991 AGCACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGCGTGCGGCCGTCC 50932 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || || |||||||| || | || || | ||||||||| || | ||| |||||||| Sbjct 50931 TCGAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCT 50872 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||| || || | ||| ||||||| |||||| ||| | ||| |||||| Sbjct 50871 TGGATCTTTGCCTTGACGTTTTCGATGGTATCACTGGGCTCAACTTCGAGGGTGATGGTC 50812 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| | || || ||||| |||||||| Sbjct 50811 TTGCCGGTCAGAGTCTTTACAAAGATTTGCAT 50780 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||||||||| ||||| || || | ||||||| || | || |||| ||| || || Sbjct 51432 GTGGACTCCTTTTGGATGTTGTAATCGGACAGGGTTCGGCCATCTTCCAACTGCTTTCCA 51373 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || | |||||||||| ||| | |||||||||||| |||||| || Sbjct 51372 GCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTG 51313 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || || | |||||| |||| ||| |||||||| || || | || Sbjct 51312 ACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTCCCCGTCAGGGTC 51253 Query 21159 TTGACAAATATTTGCATT 21176 || || || ||||||||| Sbjct 51252 TTCACGAAGATTTGCATT 51235 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||| ||| |||| || | ||||||||||| || ||||| ||||||| | Sbjct 50550 CCACCGCGGAGCCGGAGAACCAAGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAC 50491 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || || || || ||||| || | || | | |||||| ||| ||| Sbjct 50490 AGGGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAACGCTGCTGATCCGGGGGG 50431 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| ||| || ||| || | | | || |||| |||||| | Sbjct 50430 ATCCCTTCCTTGTCCTGGATTTTGGCTTTGACATTTTCAATTGTGTCACTGGGCTCGACT 50371 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||| |||||||| | |||||||| || || ||||| Sbjct 50370 TCCAGCGTGATGGTTTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 50324 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| || | |||||||| || || || || || |||| | Sbjct 50322 CCACCGCGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATATTGTAATCCGAC 50263 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| || | || || ||||| ||||| ||| | || || | |||||| || || Sbjct 50262 AGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGAGGA 50203 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| || || ||||| | ||| || || | ||||||| Sbjct 50202 ATGCCTTCCTTGTCCTGAATTTTGGCCTTCACGTTCTCGATTGTGTCGCTGGGCTCCACC 50143 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || || ||||| ||||| | |||||||| || || ||||| Sbjct 50142 TCCAGTGTGATTGTCTTACCGGTGAGGGTTTTGACGAAGATCTGCAT 50096 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| ||| | || ||||| || || ||||| ||||||| | Sbjct 50778 CCACCACGCAGTCGCAGCACCAGATGGAGGGTAGACTCTTTCTGGATGTTGTAGTCCGAC 50719 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || || ||||| ||||| ||| | || || | |||||| || || Sbjct 50718 AGGGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCGGGAGGA 50659 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| || || ||||| | ||| || |||| ||||||| Sbjct 50658 ATACCTTCCTTGTCCTGAATTTTCGCCTTCACGTTCTCGATCGTGTCACTGGGCTCCACC 50599 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || || ||||||||||| | || || || || || ||||| Sbjct 50598 TCCAGTGTGATAGTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCAT 50552 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||||| || |||| || | ||||||||||| |||||||| ||||| | | Sbjct 49866 CCTCCGCGCAGCCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 49807 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | |||| || ||||| ||||| || | || || | |||||||| || Sbjct 49806 AAGGTGCGTCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGCGGG 49747 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||||| ||||| | | | || || | |||||| Sbjct 49746 ATCCCCTCCTTGTCTTGAATCTTAGCCTTCACGTTTTCAATCGTGTCGCTCGGCTCCACC 49687 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||| || ||||| | |||||||| || || ||||| Sbjct 49686 TCGAGCGTGATGGTTTTCCCGGTCAGGGTTTTGACGAAGATCTGCAT 49640 >seq368444 Length=413118 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | || |||||||| || ||||| ||||||| |||||| | | ||| Sbjct 77714 AGCACCAGGTGTAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGCCCATCC 77773 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCT 21074 |||||||| ||||||||| | || || | ||||||||| ||| | |||| Sbjct 77774 TCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCAGGGGGGATGCCT 77824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420357689232272