Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq297272 199 4e-46 seq118272 158 1e-33 seq368444 122 9e-23 >seq297272 Length=244611 Score = 199 bits (220), Expect = 4e-46 Identities = 182/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||||||||||||||||| || ||||| || || || || || |||| Sbjct 160498 GAGCCGCTGCTGCGCGAGAACCCCCGGCGCTTCGTCATGTTTCCGATCGTGTATGAGGAC 160557 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||||||||||||| ||||||||||| || |||||||| || ||||||||||||||| Sbjct 160558 ATCTGGCGCATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGTGGAGGAGGTGGACCTG 160617 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 ||||||| | ||||||| | | || | | ||||| || |||||| ||| Sbjct 160618 GGCAAGGACCTCCCCCACTGGGACGGGCTCAAGCCCGAGGAGCGGCACTTCATCTCCCAC 160677 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGT 116805 | || ||||| ||||||||||||||||||||||| |||||||| ||||| Sbjct 160678 ATCCTTGCCTTCTTCGCCGCCAGCGACGGCATCGTTAACGAGAACCTGGT 160727 Score = 163 bits (180), Expect = 3e-35 Identities = 176/230 (77%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 116941 CCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCT 117000 |||| | || |||||| | ||||||||||| ||| | || |||||| || ||||| || Sbjct 163347 CCGTCTATTCAACGCCGTTGAGACGATGCCCTGCATTAAGAGGAAGGCGGACTGGGCACT 163406 Query 117001 GCGCTGGATC-GC--CGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGC 117057 ||||||| || | |||| ||| | || ||||||||| | || || || || || Sbjct 163407 AAACTGGATCAGCAACCGCAG---CGCCACATTTGGCGAGCGCATCGTCGCGTTTGCAGC 163463 Query 117058 CGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGG 117117 |||||||||| ||||||| ||||| ||||| |||| || ||||| ||||| || || Sbjct 163464 CGTCGAGGGCATCTTCTTCTCGGGATCGTTCGCATCCATCTTCTGGCTGAAGAAGCGGGG 163523 Query 117118 CCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||||||||||||| || |||||||||||||||||| ||||||||| Sbjct 163524 ACTCATGCCCGGCCTCACCTTCAGCAACGAGCTCATCAGTCGGGACGAGG 163573 Score = 109 bits (120), Expect = 6e-19 Identities = 93/115 (81%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||||||| ||||||||| |||||| | |||||||| |||||||||||||| || Sbjct 162374 GGTGGAGCGTTTCAGTCAGGAGGTCCAGGTGACGGAGGCGCGCTGCTTCTACGGCTTCCA 162433 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 || || || ||||| |||||||| || ||||| |||||||||||| ||| Sbjct 162434 AATGGCTATCGAGAATGTGCACTCCGAGATGTACAGCCTCCTCATCGACACTTAC 162488 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 117165 AGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCG 117224 |||| ||||| |||||| |||||| | |||||| ||| ||||| | | | | | | Sbjct 164326 AGGGCCTGCACACCGACTTCGCCTGTCTCATGTTCAGTCATCTGGTGAA-CAAGCCATCT 164384 Query 117225 CG-GCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACC 117283 | ||||| || | ||||| || |||||| |||| |||||||||| ||||| ||| Sbjct 164385 CAAGCGCGTGTGCGACAGATCATCTGCGACGCTGTCGTCATCGAGCAGGAGTTCCTGACC 164444 Query 117284 GAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAG 117343 || || || || ||| ||| | || | |||||||| |||| || ||||||||| Sbjct 164445 GATGCCCTTCCAGTGGCCCTGATCGGCATGAATTGCGAGCTGATGAAGCGCTACATCGAG 164504 Query 117344 TTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCG 117380 || ||||| ||| | ||||| | ||||| | | ||| Sbjct 164505 TTTGTCGCTGACCGTCTGCTTGTGGAGCTCGGCTGCG 164541 >seq118272 Length=246527 Score = 158 bits (174), Expect = 1e-33 Identities = 166/216 (77%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || ||||| || || || ||||| ||||||||| |||| || || ||| Sbjct 50780 ATGCAAATCTTTGTAAAGACTCTGACCGGCAAGACCATCACCCTCGAAGTTGAGCCCAGT 50839 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | ||||| |||||| ||| || | ||||| |||||||| || | ||||| Sbjct 50840 GATACCATCGAAAACG-TCAAGGCAAAGATCCAAGACAAGGAGGGCATTCCACCTGACCA 50898 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| |||||||| || || |||| ||||| || |||||||| Sbjct 50899 GCAGCGTCTCATCTTCGCCGGCAAACAACTCGAGGACGGCCGCACGCTGTCAGACTACAA 50958 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||| ||| |||| || ||||| ||| |||| Sbjct 50959 CATCCAGAAAGAGTCCACCCTTCATCTTGTGCTGCG 50994 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || || ||||||||||| |||| || || | | | Sbjct 49640 ATGCAGATCTTCGTCAAAACCCTGACCGGGAAAACCATCACGCTCGAGGTGGAGCCGAGC 49699 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || ||||| | |||| || |||| ||||| ||||| ||||| | ||||| Sbjct 49700 GACACGATTGAAAACG-TGAAGGCTAAGATTCAAGACAAGGAGGGGATCCCGCCCGACCA 49758 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| ||| ||||| ||||| || |||| |||||| | ||||||||| Sbjct 49759 GCAACGTCTGATCTTCGCCGGCAAGCAGCTTGAAGACGGACGCACCTTGTCCGACTACAA 49818 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||| ||||||||| |||| || || || || |||| || | || ||| Sbjct 49819 CATTCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGGCTGCGCGGAGGC 49867 Score = 141 bits (156), Expect = 1e-28 Identities = 163/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || || ||||| || ||||||||| | || ||||| ||| Sbjct 51235 AATGCAAATCTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTCGAGCCCAG 51294 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | | |||| |||||| || || | ||||| || ||||| ||| |||||| Sbjct 51295 CGACACCATCGAGAACG-TCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCGGACC 51353 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || ||||||| || || || ||| |||| || | || ||||| ||| |||| Sbjct 51354 AGCAGCGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGAACCCTGTCCGATTACA 51413 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||| |||||| |||| || || || || |||| Sbjct 51414 ACATCCAAAAGGAGTCCACCCTCCACCTTGTCCTGCG 51450 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| ||||| || ||||| |||| || || | | | Sbjct 49868 ATGCAGATTTTTGTCAAGACCCTCACTGGCAAGACGATCACGCTCGAGGTTGAGCCGAGC 49927 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| | |||| ||||| | ||||| ||||| |||||| |||| || Sbjct 49928 GACACGATCGAAAACG-TGAAGGCCAAAATCCAGGACAAGGAGGGAATCCCCCCGGATCA 49986 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| || || || |||| || |||||| ||||||||| Sbjct 49987 GCAGCGTCTGATCTTCGCCGGCAAGCAACTCGAGGACGGCCGTACCCTCTCCGACTACAA 50046 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| ||| |||| || || || || |||| || | || ||| Sbjct 50047 CATCCAGAAAGAGTCCACCCTTCACCTGGTCCTGCGTCTGCGCGGTGGC 50095 Score = 132 bits (146), Expect = 5e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| ||||| |||||||||||||| | || ||||| ||| Sbjct 50324 ATGCAGATCTTCGTCAAAACCCTCACCGGCAAAACCATCACGCTGGAAGTCGAGCCCAGT 50383 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| |||| | ||||| | ||||| || || |||||| |||| ||| Sbjct 50384 GACACAATTGAAAATGTCAAAGCCAAAATCCAGGACAAGGAAGGGATCCCCCCGGATCAG 50443 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| ||| ||||| || || || || | |||||||| ||||||||| Sbjct 50444 CAGCGTTTGATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACCCTGTCGGACTACAAC 50503 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| |||| || || Sbjct 50504 ATCCAGAAGGAGTCCACCCTACA 50526 Score = 122 bits (134), Expect = 9e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || |||||||| || || ||||| ||||| || |||| ||||| ||| Sbjct 51008 ATGCAAATTTTTGTAAAAACTCTGACCGGCAAGACCATTACTCTCGAGGTCGAGCCCAGT 51067 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| | || | || || | ||||| || || || || ||||||| Sbjct 51068 GACACCATCGAAAACG-TGAAAGCCAAGATCCAGGACAAGGAAGGGATTCCTCCGGACCA 51126 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||||| || ||||| ||||| || |||| || ||||| |||||||| Sbjct 51127 ACAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGTACCCTGTCGGACTACAA 51186 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||| || |||| || || || || |||| Sbjct 51187 CATCCAGAAAGAATCCACCCTCCACCTGGTTCTGCG 51222 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| || ||||| | || || || ||| Sbjct 50552 ATGCAGATCTTCGTTAAGACTCTGACCGGCAAGACTATCACACTGGAGGTGGAGCCCAGT 50611 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| ||||||| ||||| || || || || | || || Sbjct 50612 GACACGATCGAGAACG-TGAAGGCGAAAATTCAGGACAAGGAAGGTATTCCTCCCGATCA 50670 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| ||||| || || | |||||||| |||||||| Sbjct 50671 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTCGAAGATGGTCGCACCCTGTCGGACTACAA 50730 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| ||| | || || ||||| ||| |||| || | || ||| Sbjct 50731 CATCCAGAAAGAGTCTACCCTCCATCTGGTGCTGCGACTGCGTGGTGGC 50779 >seq368444 Length=413118 Score = 122 bits (134), Expect = 9e-23 Identities = 103/127 (81%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| || || |||| |||||||| |||||||| || | |||| Sbjct 77823 GGCATCCCCCCTGACCAGCAGCGTCTGATCTTTGCGGGCAAGCAGCTGGAGGATGGGCGC 77764 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| ||||||||||||||||||||| | || || || || ||| |||||||| | Sbjct 77763 ACCCTGTCGGACTACAACATCCAGAAGGAGTCGACCCTACACCTGGTGCTGCGCTTGCGT 77704 Query 40912 GGCGGCG 40918 ||||||| Sbjct 77703 GGCGGCG 77697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512839582841920