Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq16628 217 1e-51 seq8286 214 1e-50 seq247634 156 3e-33 seq275423 145 5e-30 seq266908 93.3 3e-14 >seq16628 Length=231947 Score = 217 bits (240), Expect = 1e-51 Identities = 447/646 (69%), Gaps = 19/646 (3%) Strand=Plus/Plus Query 97066 TAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGG 97125 |||||||| ||||| |||||| |||||| |||||| ||||| | |||| || | Sbjct 230598 TAAATGTGGGCATCGCCTAAATTGTGAACAAATTCACCAGGTCGTTTTCCAGTCACCTTT 230657 Query 97126 GCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATA 97185 || ||||| || | |||| || || ||||||||||| || || || | ||||||| Sbjct 230658 GCCATCATGTGTGTGAGAAGAGCGTAACTCGCAATGTTAAACGGTACACCCAATCCCATA 230717 Query 97186 TCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTC 97245 || || || | ||||| || ||||| || |||| |||| || || ||||| | Sbjct 230718 TCGGCAGAACGCTGATACAATTGACACGAGAGCTCATCATCGTCTACGTAGAACTGTGCC 230777 Query 97246 AATACA-TGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACAT 97304 || ||| ||||| || || | ||||||| || |||| |||||| | ||| | Sbjct 230778 AA-ACAGTGACATGGTGGTAGGACCATTTTCTTAATATCTGTTGGATTCCACGAACATAA 230836 Query 97305 CAACATTCTTCTATCGGTTGGGTTTGTGTGT-ATGGTATTAATTA-TCTGCTTTAATT-G 97361 | ||||| | ||| ||||| | | | | ||| | | || | ||| | ||||| | Sbjct 230837 TATCATTCGGCGGTCG-TTGGGATCATTTTTGATGATTTCAACGAGTCT--TGTAATTTG 230893 Query 97362 ATCAACGCCTTCTCCACCATAAT-TGTGCTTAAGACCTTG-ATATTCTGCTCCAAAATGC 97419 |||||| ||||| ||||| | |||| | || || ||| ||||||||||| Sbjct 230894 ATCAACACCTTCGTTTCCATAGTCTGTG--TGCGAGTTTCTATAGGTGGCTCCAAAATGA 230951 Query 97420 CTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACC-AAG 97478 | |||||| ||||| || || |||||||| || |||||||||| |||| | ||||| ||| Sbjct 230952 CGCCATTGAAATCCGTAGACCGGTCCAAGATCCCCTTCTTCTCGATCAAAAAAACCTAAG 231011 Query 97479 CTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCAAG 97538 | |||| | | | | ||| || ||| ||||| ||||| | |||| | ||| | Sbjct 231012 C-TATCGAGAAATCGACGAGAACCGTTTTGGTCCCATATGTGAATACCACGTTCTGACAA 231070 Query 97539 CTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCA 97598 |||||| || |||||||| | || |||||| | | |||||||||||| |||| ||| Sbjct 231071 TTCTTTGGCATCGGTAGATCCGCGGAGAAACCAGAGAAGTTCTTCCACAACTCCTCGCCA 231130 Query 97599 AAATACTCTCTTAGTTGTTAAGAGAGGAAAA--TCCTTTTCTAAGCTG--TATCTAGACT 97654 ||| || | || |||||||| | ||| | | ||| || | || || |||||| ||| Sbjct 231131 AAAAACGCGTTTGGTTGTTAATAAAGGCATAGTTCCGTTCCGGAG-TGAATATCTACACT 231189 Query 97655 GCATTCCAAAAACACTCAATGTTCCAACTCCTGTTCTGTCGTGTTT 97700 | | ||||||| || |||||| ||||| || | ||| | ||| Sbjct 231190 GTACACCAAAAATTAACATTGTTCCTACTCCAGTGCGGTCTTCTTT 231235 >seq8286 Length=1257 Score = 214 bits (236), Expect = 1e-50 Identities = 446/646 (69%), Gaps = 19/646 (3%) Strand=Plus/Plus Query 97066 TAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGG 97125 |||||||| ||||| |||||| |||||| |||||| ||||| | |||| || | Sbjct 452 TAAATGTGGGCATCGCCTAAATTGTGAACAAATTCACCAGGTCGTTTTCCAGTCACCTTT 511 Query 97126 GCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATA 97185 || ||||| || | |||| || || ||||||||||| || || || | |||||| Sbjct 512 GCCATCATGTGTGTGAGAAGAGCGTAACTCGCAATGTTAAACGGTACACCCAATCCCATG 571 Query 97186 TCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTC 97245 || || || | ||||| | ||||| || |||| |||| || || ||||| | Sbjct 572 TCGGCAGAACGCTGATACAGTTGACACGAGAGCTCATCATCGTCTACGTAGAACTGTGCC 631 Query 97246 AATACA-TGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACAT 97304 || ||| ||||| || || | ||||||| || |||| |||||| | ||| | Sbjct 632 AA-ACAGTGACATGGTGGTAGGACCATTTTCTTAATATCTGTTGGATTCCACGAACATAA 690 Query 97305 CAACATTCTTCTATCGGTTGGGTTTGTGTGT-ATGGTATTAATTA-TCTGCTTTAATT-G 97361 | ||||| | ||| ||||| | | | | ||| | | || | ||| | ||||| | Sbjct 691 TATCATTCGGCGGTCG-TTGGGATCATTTTTGATGATTTCAACGAGTCT--TGTAATTTG 747 Query 97362 ATCAACGCCTTCTCCACCATAAT-TGTGCTTAAGACCTTG-ATATTCTGCTCCAAAATGC 97419 |||||| ||||| ||||| | |||| | || || ||| ||||||||||| Sbjct 748 ATCAACACCTTCGTTTCCATAGTCTGTG--TGCGAGTTTCTATAGGTGGCTCCAAAATGA 805 Query 97420 CTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACC-AAG 97478 | |||||||||||| || || |||||||| || |||||||||| |||| | ||||| ||| Sbjct 806 CGCCATTGGAATCCGTAGACCGGTCCAAGATCCCCTTCTTCTCGATCAAAAAAACCTAAG 865 Query 97479 CTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCAAG 97538 | |||| | | | | ||| || ||| ||||| ||||| | |||| | ||| | Sbjct 866 C-TATCGAGAAATCGACGAGAACCGTTTTGGTCCCATATGTGAATACCACGTTCTGACAA 924 Query 97539 CTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCA 97598 |||||| || |||||||| | || |||||| | | |||||||||||| |||| ||| Sbjct 925 TTCTTTGGCATCGGTAGATCCGCGGAGAAACCAGAGAAGTTCTTCCACAACTCCTCGCCA 984 Query 97599 AAATACTCTCTTAGTTGTTAAGAGAGGAAAA--TCCTTTTCTAAGCTG--TATCTAGACT 97654 ||| || | || |||||||| | ||| | | ||| || | || || |||||| ||| Sbjct 985 AAAAACGCGTTTGGTTGTTAATAAAGGCATAGTTCCGTTCCGGAG-TGAATATCTACACT 1043 Query 97655 GCATTCCAAAAACACTCAATGTTCCAACTCCTGTTCTGTCGTGTTT 97700 | | ||||||| || |||||| ||||| || | ||| | ||| Sbjct 1044 GTACACCAAAAATTGACATTGTTCCTACTCCAGTGCGGTCTTTTTT 1089 >seq247634 Length=1103 Score = 156 bits (172), Expect = 3e-33 Identities = 217/298 (73%), Gaps = 7/298 (2%) Strand=Plus/Minus Query 97408 GCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCA 97467 ||||||||||| | |||||||||||| || || |||||||| || |||||||||| |||| Sbjct 1008 GCTCCAAAATGACGCCATTGGAATCCGTAGACCGGTCCAAGATCCCCTTCTTCTCGATCA 949 Query 97468 CAGAAACC-AAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACACC 97526 | ||||| ||||| ||| | | | | ||| || ||| ||||| ||||| | ||| Sbjct 948 AAAAAACCTAAGCT-ATCGAGAAATCGACGAGAACCGTTTTGGTCCCATATGTGAATACC 890 Query 97527 AGATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCAC 97586 | | ||| | |||||| || |||||||| | || |||||| | | ||||||||| Sbjct 889 ACGTTCTGACAATTCTTTGGCATCGGTAGATCCGCGGAGAAACCAGAGAAGTTCTTCCAC 830 Query 97587 AACACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAAA--TCCTTTTCTAAGCTG 97644 ||| |||| |||||| || | || |||||||| | ||| | | ||| || | || || Sbjct 829 AACTCCTCGCCAAAAAACGCGTTTGGTTGTTAATAAAGGCATAGTTCCGTTCCGGAG-TG 771 Query 97645 --TATCTAGACTGCATTCCAAAAACACTCAATGTTCCAACTCCTGTTCTGTCGTGTTT 97700 |||||| |||| | ||||||| || |||||| ||||| || | ||| | ||| Sbjct 770 AATATCTACACTGTACACCAAAAATTGACATTGTTCCTACTCCAGTGCGGTCTTTTTT 713 >seq275423 Length=1030 Score = 145 bits (160), Expect = 5e-30 Identities = 216/299 (72%), Gaps = 8/299 (3%) Strand=Plus/Minus Query 97408 GCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTT-CTTCTCTATC 97466 ||||||||||| | |||||||||||| || || |||||||| || |||| |||||| ||| Sbjct 954 GCTCCAAAATGACGCCATTGGAATCCGTAGACCGGTCCAAGATCCCCTTTCTTCTCGATC 895 Query 97467 ACAGAAACC-AAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACAC 97525 | | ||||| ||||| ||| | | | | ||| || ||| ||||| ||||| | || Sbjct 894 AAAAAAACCTAAGCT-ATCGAGAAATCGACGAGAACCGTTTTGGTCCCATATGTGAATAC 836 Query 97526 CAGATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCA 97585 || | ||| | |||||| || |||||||| | || |||||| | | |||||||| Sbjct 835 CACGTTCTGACAATTCTTTGGCATCGGTAGATCCGCGGAGAAACCAGAGAAGTTCTTCCA 776 Query 97586 CAACACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAAA--TCCTTTTCTAAGCT 97643 |||| |||| |||||| || | || ||||||| | ||| | | ||| || | || | Sbjct 775 CAACTCCTCGCCAAAAAACGCGTTTGGTTGTTATTAAAGGCATAGTTCCGTTCCGGAG-T 717 Query 97644 G--TATCTAGACTGCATTCCAAAAACACTCAATGTTCCAACTCCTGTTCTGTCGTGTTT 97700 | |||||| |||| | ||||||| || |||||| ||||| || | ||| | ||| Sbjct 716 GAATATCTACACTGTACACCAAAAATTGACATTGTTCCTACTCCAGTGCGGTCTTTTTT 658 >seq266908 Length=1092028 Score = 93.3 bits (102), Expect = 3e-14 Identities = 180/263 (68%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 97051 TCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACT 97110 || ||||| || | |||||||| ||||| |||||| |||||| |||||| ||||| | Sbjct 125359 TCCATGTGGTTAAGGTAAATGTGGGCATCGCCTAAATTGTGAACAAATTCACCAGGTCGT 125418 Query 97111 AAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGC 97170 |||| || | || ||||| || | |||| || || ||||||||||| || Sbjct 125419 TTTCCAGTCACCTTTGCCATCATGTGTGTGAGAAGAGCGTAACTCGCAATGTTAAACGGT 125478 Query 97171 ACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACAC 97230 || || | |||||| || || || | ||||| || ||||| || |||| |||| Sbjct 125479 ACACCCAATCCCATGTCGGCAGAACGCTGATACAATTGACACGAGAGCTCATCATCGTCT 125538 Query 97231 ACATAAAACTGACTCAATACA-TGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGAC 97289 || || ||||| ||| ||| ||||| || || | ||||||| || |||| Sbjct 125539 ACGTAGAACTGTGCCAA-ACAGTGACACGGTGGTAGGACCATTTTCTTAATATCTGTTGG 125597 Query 97290 ATTCCAAGCACACATCAACATTC 97312 |||||| | ||| | | ||||| Sbjct 125598 ATTCCACGAACATAATATCATTC 125620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345222367926440