Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq16628 118 2e-21 seq266908 86.0 9e-12 >seq16628 Length=231947 Score = 118 bits (130), Expect = 2e-21 Identities = 313/476 (66%), Gaps = 3/476 (1%) Strand=Plus/Plus Query 205330 AATTTTGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATTAATATGATTA 205389 ||||| ||||| || ||| ||||||||||||| || | | | || ||| Sbjct 230535 AATTTCGGAAAAGGTCGCGGTTCCCGTTCTAATTGTTGCTTGACGGACTCCACGTGGTTA 230594 Query 205390 ACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAATTAGTTAAA 205449 | || || || |||| || | ||| |||| ||||||| ||| | ||| | Sbjct 230595 AGGTAAATGTGGGCATCGCCTAAATTGTGAACAAATTCACCAGGTCGTTTTCCAGTCACC 230654 Query 205450 TGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACCC 205509 | ||| ||||| | || | | | ||||| |||| ||||| |||||||| || ||| Sbjct 230655 TTTGCCATCATGTGTGTGAGAAGAGCGTAACTCGCAATGTTAAACGGTACACCCAATCCC 230714 Query 205510 ATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATTACATGAAAT 205569 ||||| || || | ||||||| |||||| | ||| | || || ||| | || Sbjct 230715 ATATCGGCAGAACGCTGATACAATTGACACG--AGA-GCTCATCATCGTCTACGTAGAAC 230771 Query 205570 TGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATTCCAGGCT 205629 ||| | ||||| ||||| ||||||| ||||| || | || |||| | |||||||| | Sbjct 230772 TGTGCCAAACAGTGACATGGTGGTAGGACCATTTTCTTAATATCTGTTGGATTCCACGAA 230831 Query 205630 GTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATATGTGTTAAT 205689 |||||| || | | || | |||||| || | | | | ||| | | Sbjct 230832 CATAATATCATTCGGCGGTCGTTGGGATCATTTTTGATGATTTCAACGAGTCTTGTAATT 230891 Query 205690 TGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCAAAATGA 205749 ||||||| |||| ||| ||| | ||| | | | |||| | || ||||||||| Sbjct 230892 TGATCAACACCTTCGTTTCCATAGTCTGTGTGCGAGTTTCTATAGGTGGCTCCAAAATGA 230951 Query 205750 CGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACC 205805 ||||||||||| || || || || || | ||| ||||||| || |||| |||||| Sbjct 230952 CGCCATTGAAATCCGTAGACCGGTCCAAGATCCCCTTCTTCTCGATCAAAAAAACC 231007 >seq266908 Length=1092028 Score = 86.0 bits (94), Expect = 9e-12 Identities = 198/296 (67%), Gaps = 3/296 (1%) Strand=Plus/Plus Query 205330 AATTTTGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATTAATATGATTA 205389 ||||| ||||| || ||| ||||||||||||| || | | || || ||| Sbjct 125311 AATTTCGGAAAAGGTCGCGGTTCCCGTTCTAATTGTTGCTTGACGGACTCCATGTGGTTA 125370 Query 205390 ACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAATTAGTTAAA 205449 | || || || |||| || | ||| |||| ||||||| ||| | ||| | Sbjct 125371 AGGTAAATGTGGGCATCGCCTAAATTGTGAACAAATTCACCAGGTCGTTTTCCAGTCACC 125430 Query 205450 TGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACCC 205509 | ||| ||||| | || | | | ||||| |||| ||||| |||||||| || ||| Sbjct 125431 TTTGCCATCATGTGTGTGAGAAGAGCGTAACTCGCAATGTTAAACGGTACACCCAATCCC 125490 Query 205510 ATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATTACATGAAAT 205569 || || || || | ||||||| |||||| | ||| | || || ||| | || Sbjct 125491 ATGTCGGCAGAACGCTGATACAATTGACACG--AGA-GCTCATCATCGTCTACGTAGAAC 125547 Query 205570 TGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATTCCA 205625 ||| | ||||| ||||| ||||||| ||||| || | || |||| | |||||||| Sbjct 125548 TGTGCCAAACAGTGACACGGTGGTAGGACCATTTTCTTAATATCTGTTGGATTCCA 125603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751966813145600