Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq118272 134 9e-27 seq368444 82.4 5e-11 >seq118272 Length=246527 Score = 134 bits (148), Expect = 9e-27 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||||| ||| |||||||| | || || ||||| ||||||||||||||| Sbjct 49866 CCTCCGCGCAGCCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 49807 Query 34223 A-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 | | || || |||| || | ||||||||| ||||| || || || ||||||||| || Sbjct 49806 AAGGTG-CGTCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGCGG 49748 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | | | |||| ||| ||| || || Sbjct 49747 GATCCCCTCCTTGTCTTGAATCTTAGCCTTCACGTTTTCAATCGTGTCGCTCGGCTCCAC 49688 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||||||| ||||| || ||||| || ||||||||||| Sbjct 49687 CTCGAGCGTGATGGTTTTCCCGGTCAGGGTTTTGACGAAGATCTGCAT 49640 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||| |||||||| | || |||||||| |||||||||||||| Sbjct 50094 CCACCGCGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAG 50035 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| |||| || | |||||||| ||||| || || |||||||| || ||| Sbjct 50034 AGGGTACGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGG 49975 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | ||||||||| || ||||| ||| | | | |||| ||| ||| || | Sbjct 49974 ATTCCCTCCTTGTC--CTGGATTTTGGCCTTCACGTTTTCGATCGTGTCGCTCGGCTCAA 49917 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | |||||| || ||||| ||||| || || ||||| |||||||| Sbjct 49916 CCTCGAGCGTGATCGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCAT 49868 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| |||| || |||| ||||| || || ||||| ||||||||||| ||| Sbjct 50550 CCACCGCGGAGCCGGAGAACCAAGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAC 50491 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | |||||||| ||||| || | |||||||| || ||| Sbjct 50490 AGGGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAACGCTGCTGATCCGGGGGG 50431 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| || ||| ||||| | || | || | || | | ||||| Sbjct 50430 ATCCCTTCCTTGTCCTGGAT-TTTGGCTTTGACATTTTCAATTGTGTCACTGGGCTCGAC 50372 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||||||||||||||||||| ||||| || ||||||||||| Sbjct 50371 TTCCAGCGTGATGGTTTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 50324 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | |||||| || || | || |||||||| ||||||||||| ||| Sbjct 51006 CCACCACGAAGTCGCAGCACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAC 50947 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| || | || ||||| ||||| ||||| ||||||||||| || Sbjct 50946 AGCGTGCGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGA 50887 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| |||||| ||| | | | || | ||| | | || || Sbjct 50886 ATGCCCTCCTTGTCTTGGATCTTTGCCTTGACGTTTTCGATGGTATCACTGGGCTCAACT 50827 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| |||||||| ||||| || |||||||| ||||| Sbjct 50826 TCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTTACAAAGATTTGCAT 50780 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| ||||| |||| ||| |||||||| | || ||||||||| ||||||||||| || Sbjct 51235 TCCACCGCGGAGCCGCAGAACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCCGA 51176 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| ||| |||| || | ||||||||| || || ||||| ||||| ||||| || Sbjct 51175 CAGGGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGAGG 51116 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | | |||||||| ||| || ||||| | | | || | || | | |||| Sbjct 51115 AATCCCTTCCTTGTCCTGGATC-TTGGCTTTCACGTTTTCGATGGTGTCACTGGGCTCGA 51057 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | || ||||| |||||||| |||||||| ||||| || ||||| Sbjct 51056 CCTCGAGAGTAATGGTCTTGCCGGTCAGAGTTTTTACAAAAATTTGCAT 51008 Score = 102 bits (112), Expect = 5e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||| |||||||| | || |||||||| || ||||| || ||| Sbjct 50322 CCACCGCGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATATTGTAATCCGAC 50263 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| || || || || |||||||| ||| || Sbjct 50262 AGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGAGGA 50203 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | || |||||||| || ||||| ||| | | | || | ||| | | || | Sbjct 50202 ATGCCTTCCTTGTC--CTGAATTTTGGCCTTCACGTTCTCGATTGTGTCGCTGGGCTCCA 50145 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| ||||| || || |||||||| ||||| || ||||||||||| Sbjct 50144 CCTCCAGTGTGATTGTCTTACCGGTGAGGGTTTTGACGAAGATCTGCAT 50096 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||||| || | ||| |||||||| ||||||||||| ||| Sbjct 50778 CCACCACGCAGTCGCAGCACCAGATGGAGGGTAGACTCTTTCTGGATGTTGTAGTCCGAC 50719 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || || | ||||||||| || || || || |||||||| ||| || Sbjct 50718 AGGGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCGGGAGGA 50659 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| || || ||| | | | |||| || | | || || Sbjct 50658 ATACCTTCCTTGTCCTGAATTTTCGCCTTCACGTTCTCGATCGTGTCACTGGGCTCCACC 50599 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||| || |||||||| ||||| || || ||||||||||| Sbjct 50598 TCCAGTGTGATAGTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCAT 50552 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | ||| || ||||| | || || || || |||||||| |||||| Sbjct 51462 CCACCACGGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGAC 51403 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || ||||||||||| || || || ||||| ||||||||||| ||| Sbjct 51402 AGGGTTCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGA 51343 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | | | || | ||| | | ||||| Sbjct 51342 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACC 51283 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| || || || || || ||||| ||||| ||||| Sbjct 51282 TCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATTTGCAT 51236 >seq368444 Length=413118 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| |||| | |||||||||||||| || || ||||| ||||||||||| ||| Sbjct 77699 CCGCCACGCAAGCGCAGCACCAGGTGTAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 77758 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 || || | || |||| ||||||||| || || || || ||||||||||| Sbjct 77759 AGGGTGCGCCCATCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTC 77811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 321617147419520