Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq16628 150 1e-31 seq8286 141 7e-29 seq266908 104 2e-17 >seq16628 Length=231947 Score = 150 bits (166), Expect = 1e-31 Identities = 483/739 (65%), Gaps = 28/739 (4%) Strand=Plus/Minus Query 20047 CCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGGTTT 20106 || |||||||| || ||||| || |||||| ||| ||||| ||||| | | |||||| Sbjct 231157 CCTTTATTAACAACCAAACGCGTTTTTTGGCGAGGAGTTGTGGAAGAACTTCTCTGGTTT 231098 Query 20107 ATTAAAGGATCAACAAATTCTACCGAGCTTGT-AGAAAAAGGAGTTAAGATTTGGAGCGC 20165 | ||||| || || | | || |||| |||| || || | || ||| | Sbjct 231097 CTCCGCGGATCTACCGATGCCAAAGAA-TTGTCAGAACGTGGTATTCACATATGGGACCA 231039 Query 20166 ACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAGGGGGATTT 20225 | | || ||| | |||| | | ||| || ||| | || |||| |||||| | Sbjct 231038 AAACGGTTCTCGTCGATTTCTCGATAGCTTAGGTTTTTTTGATCGAGAAGAAGGGGATCT 230979 Query 20226 GGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAACAC 20285 || || || || |||||||||||| | ||||||||||| ||| || | |||| Sbjct 230978 TGGACCGGTCTACGGATTTCAATGGCGTCATTTTGGAGCCACCTATAGAAACTCGCACAC 230919 Query 20286 AAATTATTTTGGACA---AGGAGTAGATCAA-TTACAAAATGTTATTAATTTAATTAAAA 20341 | | ||| ||| | ||| || |||||| |||||| | | || | | |||| Sbjct 230918 AGACTAT---GGAAACGAAGGTGTTGATCAAATTACAAGACTCGTTGAAATCATCAAAAA 230862 Query 20342 CGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAA 20401 || ||||| |||| | |||| || ||||| | ||||| | | |||| | || Sbjct 230861 TGATCCCAA-CGACCGCCGAATGATATTATGTTCGTGGAATCCAACAGATATTAAGAAAA 230803 Query 20402 TGGCTTTGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAATAATGAATTGTCG 20460 ||| | || |||||||| || | || || || ||||| | || |||| | ||| Sbjct 230802 TGGTCCTACCACCATGTCAC-TGTTTGGCACAGTTCTACGTAGACGATGATGAGCTCTCG 230744 Query 20461 TGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGT 20520 |||||| ||||||| || || || ||||||||| ||||||| || || || ||||| ||| Sbjct 230743 TGTCAATTGTATCAGCGTTCTGCCGATATGGGATTGGGTGTACCGTTTAACATTGCGAGT 230684 Query 20521 TATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACG----GGTGACTT 20576 || || || || || | ||||| ||| | || || | |||||| ||||| || Sbjct 230683 TACGCTCTTCTCACACACATGATGGCAAAGGTGACTGG----AAAACGACCTGGTGAATT 230628 Query 20577 AGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACA 20636 || |||| |||| || || || ||||||||||| || | || | | || ||| Sbjct 230627 TGTTCACAATTTAGGCGATGCCCACATTTACCTTAACCACGTGGAGTCCGTCAAGCAACA 230568 Query 20637 GTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAGATAT 20696 ||| ||| |||| || || || | | ||||| | ||| || | ||||| Sbjct 230567 ATTAGAACGGGAACCGCGACCTTTTCCGAAATTGCGCATCAGGCGAGACGTGACTGATAT 230508 Query 20697 TAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATC----CCCATAATTCAA 20752 | || ||| | ||||||||||| ||| | |||||||| |||| || | || Sbjct 230507 TTTTGACTTTCGATGTGATGATTTTGAGTTGATCGATTATAATCCATACCCAAAAATAAA 230448 Query 20753 TTCCAATGGAAATGTCTGT 20771 |||||| ||||| || Sbjct 230447 ----AATGGAGATGTCGGT 230433 >seq8286 Length=1257 Score = 141 bits (156), Expect = 7e-29 Identities = 481/739 (65%), Gaps = 28/739 (4%) Strand=Plus/Minus Query 20047 CCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGGTTT 20106 || |||||||| || ||||| || |||||| ||| ||||| ||||| | | |||||| Sbjct 1011 CCTTTATTAACAACCAAACGCGTTTTTTGGCGAGGAGTTGTGGAAGAACTTCTCTGGTTT 952 Query 20107 ATTAAAGGATCAACAAATTCTACCGAGCTTGT-AGAAAAAGGAGTTAAGATTTGGAGCGC 20165 | ||||| || || | | || |||| |||| || || | || ||| | Sbjct 951 CTCCGCGGATCTACCGATGCCAAAGAA-TTGTCAGAACGTGGTATTCACATATGGGACCA 893 Query 20166 ACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAGGGGGATTT 20225 | | || ||| | |||| | | ||| || ||| | || |||| |||||| | Sbjct 892 AAACGGTTCTCGTCGATTTCTCGATAGCTTAGGTTTTTTTGATCGAGAAGAAGGGGATCT 833 Query 20226 GGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAACAC 20285 || || || || ||||| |||||| | ||||||||||| ||| || | |||| Sbjct 832 TGGACCGGTCTACGGATTCCAATGGCGTCATTTTGGAGCCACCTATAGAAACTCGCACAC 773 Query 20286 AAATTATTTTGGACA---AGGAGTAGATCAA-TTACAAAATGTTATTAATTTAATTAAAA 20341 | | ||| ||| | ||| || |||||| |||||| | | || | | |||| Sbjct 772 AGACTAT---GGAAACGAAGGTGTTGATCAAATTACAAGACTCGTTGAAATCATCAAAAA 716 Query 20342 CGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAA 20401 || ||||| |||| | |||| || ||||| | ||||| | | |||| | || Sbjct 715 TGATCCCAA-CGACCGCCGAATGATATTATGTTCGTGGAATCCAACAGATATTAAGAAAA 657 Query 20402 TGGCTTTGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAATAATGAATTGTCG 20460 ||| | || |||||||| || | || || || ||||| | || |||| | ||| Sbjct 656 TGGTCCTACCACCATGTCAC-TGTTTGGCACAGTTCTACGTAGACGATGATGAGCTCTCG 598 Query 20461 TGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGT 20520 |||||| ||||||| || || || || |||||| ||||||| || || || ||||| ||| Sbjct 597 TGTCAACTGTATCAGCGTTCTGCCGACATGGGATTGGGTGTACCGTTTAACATTGCGAGT 538 Query 20521 TATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACG----GGTGACTT 20576 || || || || || | ||||| ||| | || || | |||||| ||||| || Sbjct 537 TACGCTCTTCTCACACACATGATGGCAAAGGTGACTGG----AAAACGACCTGGTGAATT 482 Query 20577 AGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACA 20636 || |||| |||| || || || ||||||||||| || | || | | || ||| Sbjct 481 TGTTCACAATTTAGGCGATGCCCACATTTACCTTAACCACGTGGAGTCCGTCAAGCAACA 422 Query 20637 GTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAGATAT 20696 ||| ||| |||| || || || | | ||||| | ||| || | ||||| Sbjct 421 ATTAGAACGGGAACCGCGACCTTTTCCGAAATTGCGCATCAGGCGAGACGTGACTGATAT 362 Query 20697 TAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATC----CCCATAATTCAA 20752 | || ||| | ||||||||||| ||| | |||||||| |||| || | || Sbjct 361 TTTTGACTTTCGATGTGATGATTTTGAGTTGATCGATTATAATCCATACCCAAAAATAAA 302 Query 20753 TTCCAATGGAAATGTCTGT 20771 |||||| ||||| || Sbjct 301 ----AATGGAGATGTCGGT 287 >seq266908 Length=1092028 Score = 104 bits (114), Expect = 2e-17 Identities = 292/443 (66%), Gaps = 19/443 (4%) Strand=Plus/Minus Query 20338 AAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCT 20397 |||| || ||||| ||| | |||| || ||||| | ||||| | | |||| | Sbjct 125641 AAAATGATCCCAAG-GACCGCCGAATGATATTATGTTCGTGGAATCCAACAGATATTAAG 125583 Query 20398 TTAATGGCTTTGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAATAATGAATT 20456 ||||| | || || ||||| || | || || || ||||| | || |||| | Sbjct 125582 AAAATGGTCCTACCACCGTGTCAC-TGTTTGGCACAGTTCTACGTAGACGATGATGAGCT 125524 Query 20457 GTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGC 20516 ||||||||| ||||||| || || || || |||||| ||||||| || || || ||||| Sbjct 125523 CTCGTGTCAATTGTATCAGCGTTCTGCCGACATGGGATTGGGTGTACCGTTTAACATTGC 125464 Query 20517 AAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACG----GGTG 20572 ||||| || || || || | ||||| ||| | || || | |||||| |||| Sbjct 125463 GAGTTACGCTCTTCTCACACACATGATGGCAAAGGTGACTGG----AAAACGACCTGGTG 125408 Query 20573 ACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAAT 20632 | || || |||| |||| || || || ||||||||||| || || || | | || Sbjct 125407 AATTTGTTCACAATTTAGGCGATGCCCACATTTACCTTAACCACATGGAGTCCGTCAAGC 125348 Query 20633 TACAGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAG 20692 ||| ||| ||| |||| || || || | | ||||| | ||| || | | Sbjct 125347 AACAATTAGAACGGGAACCGCGACCTTTTCCGAAATTGCGCATCAGGCGAGACGTGACTG 125288 Query 20693 ATATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATC----CCCATAAT 20748 ||||| || ||| | ||||||||||| ||| | |||||||| |||| || Sbjct 125287 ATATTTTTGACTTTCGATGTGATGATTTTGAGTTGATCGATTATAATCCATACCCAAAAA 125228 Query 20749 TCAATTCCAATGGAAATGTCTGT 20771 | || |||||| ||||| || Sbjct 125227 TAAA----AATGGAGATGTCGGT 125209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397386401097940