Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq128081 87.8 4e-12 >seq128081 Length=1306280 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 249271 GGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTG 249330 ||| | || || ||||| |||| |||||||| || | || || ||||||||| || Sbjct 763202 GGGGCATTTGCGATGTACCTGGAGCCATGGCACGCGGACGTGTTTGACTTCCTGGACCTG 763261 Query 249331 AAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTC 249390 |||||||||| ||||| ||| | | || || || |||||||||| ||| ||| || Sbjct 763262 AAAAAGAACACGGGCAAGGAGGAGAACCGGGCACGGGATCTCTTCTACGCCCTCTGGATC 763321 Query 249391 TCCGACTTGTTCATGCGCCGCGT 249413 | ||| |||||||||| || || Sbjct 763322 CCAGACCTGTTCATGCGGCGGGT 763344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068683065037056