Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq118272 116 3e-21 >seq118272 Length=246527 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | || || | |||| || || || ||| ||||| ||||||||||| Sbjct 50779 GCCACCACGCAGTCGCAGCACCAGATGGAGGGTAGACTCTTTCTGGATGTTGTAGTCCGA 50720 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| |||| | || || || || || || || || |||| ||||| || |||||||| Sbjct 50719 CAGGGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCGGGAGG 50660 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||| ||||||||| |||||| ||| || | | | |||| | |||||| Sbjct 50659 AATACCTTCCTTGTCCTGAATTTTCGCCTTCACGTTCTCGATCGTGTCACTGGGCTCCAC 50600 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| || || |||||||| ||||||||||| || ||||| |||||| Sbjct 50599 CTCCAGTGTGATAGTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCATG 50551 Score = 113 bits (124), Expect = 4e-20 Identities = 151/209 (72%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||| ||||| ||||||||||| ||| ||| |||| || | Sbjct 50987 CAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGCGTGCGGCCGTCCTCGA 50928 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 ||||||| |||||||| || | ||||| ||||| || || | ||||||||||| | Sbjct 50927 GTTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCTTGGA 50868 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | ||| ||| || | | | | || | ||| || || | ||| || ||||||| Sbjct 50867 TCTTTGCCTTGACGTTTTCGATGGTATCACTGGGCTCAACTTCGAGGGTGATGGTCTTGC 50808 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | ||||||||||| ||||||||||||||| Sbjct 50807 CGGTCAGAGTCTTTACAAAGATTTGCATG 50779 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| |||||||||||||||||||||| || ||| |||| || Sbjct 49848 ACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGTCCGTCTTCA 49789 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| || || |||||||| || | ||||||||||| | Sbjct 49788 AGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGCGGGATCCCCTCCTTGTCTTGA 49729 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| | ||||||||| | || || || || Sbjct 49728 ATCTTAGCCTTCACGTTTTCAATCGTGTCGCTCGGCTCCACCTCGAGCGTGATGGTTTTC 49669 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| || || || ||||| |||||| Sbjct 49668 CCGGTCAGGGTTTTGACGAAGATCTGCATG 49639 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||| ||||| |||||||||||| || || |||| || Sbjct 50076 ACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCG 50017 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || |||||||| |||| ||||| || || || || | |||||||||||| Sbjct 50016 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGG 49957 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | |||| | ||| ||||| | || ||||||||| Sbjct 49956 ATTTTGGCCTTCACGTTTTCGATCGTGTCGCTCGGCTCAACCTCGAGCGTGATCGTCTTG 49897 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || ||||| ||||| || |||||| Sbjct 49896 CCAGTGAGGGTCTTGACAAAAATCTGCATG 49867 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||| || |||||||| ||| ||| || | || |||| || Sbjct 51439 GTGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGACAGGGTTCGGCCATCTTCCAACTG 51380 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||| || || || | ||||| ||||| || || | || ||||||||| || || Sbjct 51379 CTTTCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTT 51320 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| | ||| ||||||| ||| || ||||| ||||| Sbjct 51319 AGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTCCCCGT 51260 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 ||| |||||||| ||||||||||| Sbjct 51259 CAGGGTCTTCACGAAGATTTGCAT 51236 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||| ||||||||||| ||| ||| | || || Sbjct 50532 ACCAAGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCG 50473 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || |||||||| ||||| ||||| || || || || | || ||||||||| Sbjct 50472 AGTTGCTTGCCGGCGAAGATCAAACGCTGCTGATCCGGGGGGATCCCTTCCTTGTCCTGG 50413 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| || || | | |||| | ||| || |||| || || || ||| Sbjct 50412 ATTTTGGCTTTGACATTTTCAATTGTGTCACTGGGCTCGACTTCCAGCGTGATGGTTTTG 50353 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || || || || ||||| |||||| Sbjct 50352 CCGGTGAGGGTTTTGACGAAGATCTGCATG 50323 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAG---TTGGCGATCGTCG 45184 |||| ||| || ||| ||| ||||| || ||||| || ||| | ||| ||| ||| Sbjct 50304 ACCAGGTGAAGGGTGGACTCTTTCTGGATATTGTAATCCGACAGGGTTCGGCCATCTTCG 50245 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || ||||| || |||| ||||| || |||||||| | || ||||||||| Sbjct 50244 ---AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGAGGAATGCCTTCCTTGTCC 50188 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 |||||| ||| || | | | |||| | ||||||||||| || || ||| Sbjct 50187 TGAATTTTGGCCTTCACGTTCTCGATTGTGTCGCTGGGCTCCACCTCCAGTGTGATTGTC 50128 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || || || || || ||||| |||||| Sbjct 50127 TTACCGGTGAGGGTTTTGACGAAGATCTGCATG 50095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393296103779332