Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq118272 89.7 4e-13 >seq118272 Length=246527 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/234 (69%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 24826 AACA-TCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGA 24884 |||| |||||||||| || || |||||| | ||||| ||||| || || |||| || || Sbjct 49633 AACAGTCATGCAGATCTTCGTCAAAACCCTGACCGGGAAAACCATCACGCTCGAGGTGGA 49692 Query 24885 ATCGAGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGT 24944 ||||||||| | |||| || |||| || ||| | || || || | ||| Sbjct 49693 GCCGAGCGACACGATTGAAAACGTGAAGGCTAAGATTCAAGACAAGGAGGGGATCCCGCC 49752 Query 24945 TGACCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGA 25004 |||||||||||| | || | || ||||| || || ||||| || || ||| Sbjct 49753 CGACCAGCAACGTCTGATCTTCGCCGGCAAGCAGCTTGAAGACGGACGCACCTTGTCCGA 49812 Query 25005 TTACAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 |||| ||| ||||| ||| |||| || || | || | || |||||||||| Sbjct 49813 CTACAACATTCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGGCTGCGCGGAGG 49866 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| || || |||||| | ||||||||||| || || | || ||||| | || Sbjct 50323 CATGCAGATCTTCGTCAAAACCCTCACCGGCAAAACCATCACGCTGGAAGTCGAGCCCAG 50382 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 |||| | |||| ||| || | ||||| | || ||||| | || || || Sbjct 50383 TGACACAATTGAAAATGTCAAAGCCAAAATCCAGGACAAGGAAGGGATCCCCCCGGATCA 50442 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||| ||||| || | || ||||| ||||| |||||| | || || || |||| Sbjct 50443 GCAGCGTTTGATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACCCTGTCGGACTACAA 50502 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 ||| ||||| ||| |||| || || || || | || | ||||| || Sbjct 50503 CATCCAGAAGGAGTCCACCCTACACTTGGTTCTCCGGCTCCGCGGTGG 50550 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 |||||| || ||||| || || | |||||||| || || ||| |||| || || | || Sbjct 50779 CATGCAAATCTTTGTAAAGACTCTGACCGGCAAGACCATCACCCTCGAAGTTGAGCCCAG 50838 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 || | | |||| || |||| ||| || | || || ||| | || |||||| Sbjct 50839 TGATACCATCGAAAACGTCAAGGCAAAGATCCAAGACAAGGAGGGCATTCCACCTGACCA 50898 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||| ||| | || | || ||||||||||| || || | || || || |||| Sbjct 50899 GCAGCGTCTCATCTTCGCCGGCAAACAACTCGAGGACGGCCGCACGCTGTCAGACTACAA 50958 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 ||| ||||||||| |||| |||||| | ||| | ||| | || || || Sbjct 50959 CATCCAGAAAGAGTCCACCCTTCATCTTGTGCTGCGACTTCGTGGTGG 51006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 416420300224640