Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq247634 114 3e-20 seq8286 114 3e-20 seq275423 109 1e-18 seq16628 107 4e-18 >seq247634 Length=1103 Score = 114 bits (126), Expect = 3e-20 Identities = 210/303 (69%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 35143 GAAGAAGGACGATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGTT 35202 |||||| | || | |||||| |||||| | || |||||||| || || | Sbjct 709 GAAGAAAAAAGACCGCACTGGAGTAGGAACAATGTCAATTTTTGGTGTACAGTGTAGATA 768 Query 35203 CTCTCTTCGAGACGACACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGT 35262 || || || ||| ||||| || | | || ||||| |||| ||| ||||||| Sbjct 769 TTCACTCCGGAACGGAACTATGCCTTTATTAACAACCAAACGCGTTTTTTGGCGAGGAGT 828 Query 35263 TGTGGAAGAACT-CTCGTGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGA 35321 |||||||||||| ||| ||||| || | || ||| || |||||||||||| | ||| Sbjct 829 TGTGGAAGAACTTCTC-TGGTTTCTCCGCGGATCTACCGATGCCAAAGAATTGTC--AGA 885 Query 35322 AGAAGATA--CACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTT 35379 | | || ||||| ||| || || || || || |||| | || || ||| || Sbjct 886 ACGTGGTATTCACATATGGGACCAAAACGGTTCTCGTCGATTTCTCGATAGCTTAGGTTT 945 Query 35380 ATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGG 35439 | ||| ||| ||| || ||| | ||||| || |||||||||||||||||||||||||| Sbjct 946 TTTTGATCGAGAAGAAGGGGATCTTGGACCGGTCTACGGATTCCAATGGCGTCATTTTGG 1005 Query 35440 TGC 35442 || Sbjct 1006 AGC 1008 >seq8286 Length=1257 Score = 114 bits (126), Expect = 3e-20 Identities = 210/303 (69%), Gaps = 6/303 (2%) Strand=Plus/Minus Query 35143 GAAGAAGGACGATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGTT 35202 |||||| | || | |||||| |||||| | || |||||||| || || | Sbjct 1093 GAAGAAAAAAGACCGCACTGGAGTAGGAACAATGTCAATTTTTGGTGTACAGTGTAGATA 1034 Query 35203 CTCTCTTCGAGACGACACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGT 35262 || || || ||| ||||| || | | || ||||| |||| ||| ||||||| Sbjct 1033 TTCACTCCGGAACGGAACTATGCCTTTATTAACAACCAAACGCGTTTTTTGGCGAGGAGT 974 Query 35263 TGTGGAAGAACT-CTCGTGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGA 35321 |||||||||||| ||| ||||| || | || ||| || |||||||||||| | ||| Sbjct 973 TGTGGAAGAACTTCTC-TGGTTTCTCCGCGGATCTACCGATGCCAAAGAATTGTC--AGA 917 Query 35322 AGAAGATA--CACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTT 35379 | | || ||||| ||| || || || || || |||| | || || ||| || Sbjct 916 ACGTGGTATTCACATATGGGACCAAAACGGTTCTCGTCGATTTCTCGATAGCTTAGGTTT 857 Query 35380 ATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGG 35439 | ||| ||| ||| || ||| | ||||| || |||||||||||||||||||||||||| Sbjct 856 TTTTGATCGAGAAGAAGGGGATCTTGGACCGGTCTACGGATTCCAATGGCGTCATTTTGG 797 Query 35440 TGC 35442 || Sbjct 796 AGC 794 >seq275423 Length=1030 Score = 109 bits (120), Expect = 1e-18 Identities = 210/304 (69%), Gaps = 7/304 (2%) Strand=Plus/Plus Query 35143 GAAGAAGGACGATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGTT 35202 |||||| | || | |||||| |||||| | || |||||||| || || | Sbjct 654 GAAGAAAAAAGACCGCACTGGAGTAGGAACAATGTCAATTTTTGGTGTACAGTGTAGATA 713 Query 35203 CTCTCTTCGAGACGACACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGT 35262 || || || ||| ||||| || | | || ||||| |||| ||| ||||||| Sbjct 714 TTCACTCCGGAACGGAACTATGCCTTTAATAACAACCAAACGCGTTTTTTGGCGAGGAGT 773 Query 35263 TGTGGAAGAACT-CTCGTGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGA 35321 |||||||||||| ||| ||||| || | || ||| || |||||||||||| | ||| Sbjct 774 TGTGGAAGAACTTCTC-TGGTTTCTCCGCGGATCTACCGATGCCAAAGAATTGTC--AGA 830 Query 35322 AGAAGATA--CACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTT 35379 | | || ||||| ||| || || || || || |||| | || || ||| || Sbjct 831 ACGTGGTATTCACATATGGGACCAAAACGGTTCTCGTCGATTTCTCGATAGCTTAGGTTT 890 Query 35380 ATACGATAGAGCAGAG-GGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTG 35438 | ||| ||| ||| || ||| | ||||| || ||||||||||||||||||||||||| Sbjct 891 TTTTGATCGAGAAGAAAGGGGATCTTGGACCGGTCTACGGATTCCAATGGCGTCATTTTG 950 Query 35439 GTGC 35442 | || Sbjct 951 GAGC 954 >seq16628 Length=231947 Score = 107 bits (118), Expect = 4e-18 Identities = 146/199 (73%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 35247 TTTTCTGGAGAGGAGTTGTGGAAGAACT-CTCGTGGTTCATCAGGGGCAATACAGACGCC 35305 |||| ||| ||||||||||||||||||| ||| ||||| || | || ||| || ||| Sbjct 231135 TTTTTTGGCGAGGAGTTGTGGAAGAACTTCTC-TGGTTTCTCCGCGGATCTACCGATGCC 231077 Query 35306 AAAGAATTGGCCAAGAAGAAGATA--CACATCTGGAACGCTAATGGGTCGCGGGAATTTT 35363 ||||||||| | |||| | || ||||| ||| || || || || || |||| Sbjct 231076 AAAGAATTGTC--AGAACGTGGTATTCACATATGGGACCAAAACGGTTCTCGTCGATTTC 231019 Query 35364 TGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCC 35423 | || || ||| || | ||| ||| ||| || ||| | ||||| || |||||||| | Sbjct 231018 TCGATAGCTTAGGTTTTTTTGATCGAGAAGAAGGGGATCTTGGACCGGTCTACGGATTTC 230959 Query 35424 AATGGCGTCATTTTGGTGC 35442 |||||||||||||||| || Sbjct 230958 AATGGCGTCATTTTGGAGC 230940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984899194304860