Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq16628 612 2e-170 >seq16628 Length=231947 Score = 612 bits (678), Expect = 2e-170 Identities = 1504/2268 (66%), Gaps = 26/2268 (1%) Strand=Plus/Plus Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096 ||||||| ||| ||||| |||| | || ||||| || |||| ||| |||||||| Sbjct 198615 TTGTCCACTGTAAATTGGATGGCATTTACAGCAGGTTTGGTTCGTAAATAATACATTCCA 198674 Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156 ||||| || || || |||| || ||||||||||||| || ||||| ||| | || Sbjct 198675 GTTTTCAGTCCAAGTTTCCAACCACAAAAATGCATACTTGTAAGTTTTCCATACGTTGGC 198734 Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216 | || || || ||||||| ||||||||||| || | ||| ||||| | ||||| | | Sbjct 198735 TGAGCGATGTGTATATTCAGTGATTGACTTTGGTCCACGAAAGCTCCGCGATCTGCCGAC 198794 Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 62275 |||| | || |||| || | ||||||||| | ||| ||| ||| ||||| || Sbjct 198795 ATTTCCAAAATATTCTTCTGAGAAATTTCCCACACAGTGCGATACAACATTTTTAAT-TC 198853 Query 62276 TTCTGGAAGGTTTGTATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTC 62335 || || | || || |||| || ||| | | || | ||| || | | Sbjct 198854 TTTAGGTATATTCAGCTTTTGAACAGAACCATTGTTAGCAATCAGTTCATTTTTTAAGTT 198913 Query 62336 ATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAA 62395 || |||||||| || ||| || | | |||||| | || |||| || || Sbjct 198914 GTCGTTCCATAAACCGAGACGCGTCAAATCTTTCAAGAGATGGTGATTTACTATCTGAAA 198973 Query 62396 TTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATT 62455 ||||||||| | ||| | |||||| || | ||| || || || ||||||| | ||| || Sbjct 198974 TTCTCCAGAAAGTACGCGCCGAGTATACACATTGCTAGTGTATGGTTCCATTGCCTCGTT 199033 Query 62456 ATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCT 62515 ||| || | ||| || ||||| ||||| || ||||| ||||| || | | |||||| | Sbjct 199034 ATTACCAAGAATCTGCGCAGTAGATGCTGTTGGCATTGGTGCTACGAGAAGACTATTGCG 199093 Query 62516 AAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTAC 62575 | || | || | ||| | ||||||| | ||||| ||| || | || ||| Sbjct 199094 GATTCCAAAGCTTTTAATTCTTTCTTTTAAAGCAGACCAATCCCACAGGTTTGAAGGTGT 199153 Query 62576 AACANNNNNNNNNNNATATTGTAGAATACCGT----TACTGGCGTACGATCCTACATATG 62631 ||| || || || || || | |||||| ||| | ||| | Sbjct 199154 TACATTCCACATATCGTACTGAAGGATTCCTTGTGATACTGGACTACCAGGGTAC----G 199209 Query 62632 TATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAA 62691 | || || || || ||| | || |||| ||||||| | || || || || ||||| | Sbjct 199210 TCTCGTACGGACCAAACTTTTTAGACAGTTCACAACTCTCTTCCAAAGCTCCATAATATA 199269 Query 62692 TGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTA 62751 | ||||||||||| |||||||| | || ||||| | || || ||| ||| Sbjct 199270 TTGTTTCAAAGATTTTCTTATTAATTTCACAAGCTTCGTCACAGTCGAAAGGAAGTCTTA 199329 Query 62752 AGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 62811 | | ||| || ||||| || || ||||| || || || || ||||| | ||| | | | | Sbjct 199330 ATAAAATGAAAGCGTCGGCCAAACCTTGGACTCCGATTCCAATAGGGCGATGCCGCATGT 199389 Query 62812 TAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 62871 | || | || ||||| ||||| ||||||||||||| ||| || |||||||| | |||| Sbjct 199390 TTGAAAGTTTCGCTTCGGGAATTGGATAATAATTAACATCGATTATTTTATTCAAGTTTC 199449 Query 62872 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATTACAA 62931 | | ||| | || | || ||| |||||| || | |||| || | Sbjct 199450 TAGTTACGACTCTAGTTACTTGACGCAATTTTTCAAAATCGAAGTGTCCATGATAAACGA 199509 Query 62932 ACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATT 62991 | ||||| |||| || || | |||||||||||| ||||| | | | || || | Sbjct 199510 ATCGATTCAAAGCAATCGACGCTAAATTACACACGGCAACCTCGTCAACGGACGTGTACT 199569 Query 62992 GTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCT 63051 || || || || || ||||||||||| || || || || | |||| |||||| | Sbjct 199570 CTACGATTTCGGTACATAGATTACTACATTTTATTGTACCGACGTTTTTTTGATTCGATT 199629 Query 63052 TTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTA 63111 || | || || || || || || | || |||| ||||||||||| | || ||||| | Sbjct 199630 TTCTATTGCAGGCGTCTTTGTATAACATATATGGCGTACCAGTTTCCGTTTGTGATTCGA 199689 Query 63112 TAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTC--TTTC 63169 |||| || |||||| | | || | | || || | |||||| | || Sbjct 199690 TAATTGCACTCCAGAGTTGTTGTGCACGAACTT--GACGCCGATAACGTTTCTCCGTCTC 199747 Query 63170 GTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTC 63229 |||| || || | | |||||| || || || | |||| | || ||||| ||| Sbjct 199748 GTATCGAACGTAAAGTTTTTCGAAGTCTTCGCCGTATACATCTTGCAGGTGAGGACTTTC 199807 Query 63230 ATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGG 63289 | ||||||||||||||||| ||| || || | ||| | |||||| || | ||| || Sbjct 199808 GTGTGGACACATCAACGACCATATTCCATCTTCTTCCACCCTTTTCATGAATAAATCGGG 199867 Query 63290 AATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 63349 |||||| | | | ||| ||||| | || ||| || || || || ||||| ||||| Sbjct 199868 AATCCACAAACCGTAAAAAAGATCACGTGCCCTACTCTCTTCTTTACCGGTATTTTTTTT 199927 Query 63350 AAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCC 63409 ||||| | || | | | ||| | ||||||||||||| || ||||| || |||| Sbjct 199928 TAGATCCAAAAAATCGAACACATCTGCGTGCCACGGTTCCAGATAGATGGCGATCGCTCC 199987 Query 63410 AGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 63469 || | |||||| || |||||||| | ||| | || ||||| ||||| |||| | ||| Sbjct 199988 CGGTCTTTTGTTGCCACCCTGATCGACGTAACGTGCCGTGTTGTTATACACTCGTAGCAT 200047 Query 63470 TGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT 63529 || | ||||||||| ||| ||||||| || || | || || | |||| |||||||| Sbjct 200048 GGGTACAATACCGTTCGATGTACCATTTGTTCCTGCTATGTAACTTCCAGAAGCACGAAT 200107 Query 63530 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 63589 || || | |||||||| || ||| ||| || || | ||| || |||| | Sbjct 200108 GTTGTGTATGTTAATTCCTATTCCACCAGCCGATTTTGAAATGAGTGCACACTGTTTCAG 200167 Query 63590 CGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACAT 63649 || || || || |||||||||||||| || |||| | | || |||||| || |||| Sbjct 200168 TGTATCGTATATTCCTTCTATGCTATCGTCTTTCATTTGCAATAAAAAACAACTCGACAG 200227 Query 63650 TTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 63709 ||| | || ||| || || || || | || ||||| || ||||||||||||||||| Sbjct 200228 TTGCGGTTTAGGAGTCCCAGCGTTGAAAAGTGTGGGAGATGCTTGCGTAAACCATTTTTC 200287 Query 63710 AGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGC 63769 ||| | || |||||||| ||||| || | | ||| ||||| || | | Sbjct 200288 AGACATGAGGTTGTACGTTTCAATCGCACTGCTAAGATCGTCCCCGTGAATGCCAATCGA 200347 Query 63770 GACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTA 63829 || ||||| | |||||| || || | || |||| ||| || || || | || | Sbjct 200348 AACGCGCATAAGCATGTGTTGTGGCCGCTCTACAACTTTCCCATTAATCTTGAGTAAATG 200407 Query 63830 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATA 63887 | |||||| || ||||| ||||| ||||| || ||||| || || ||||||| Sbjct 200408 CGCACGTTCCAATGTCTTAAATCCAAAGTAGTTATAATTGAAA--TCGCGATCGTAAACG 200465 Query 63888 ATAACCGAATTGAGCTTATCCTTATATTTGTTAACTAT-ATCCATGGTAATACTTGAAAT 63946 || ||| || | ||| || || |||| || | ||| | | | ||| Sbjct 200466 ATGGACGAGTTTAAAAAATCTGCATTATTCATAACGATCTTATATGTTTCTTC-GCTAAT 200524 Query 63947 AATCGGAGAATGTTTCCCATT-TTTAGGATTAACATAGTTGA-ATAAATCCTCCATCACT 64004 || || | | ||| || || || ||| |||| ||| ||||||| |||||| Sbjct 200525 CATGGGCGTAGATTTTCCGTTAGTTTCATTTACCATA--TGATATAAATCAGTCATCACC 200582 Query 64005 TCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGA 64064 || ||||| | ||||| ||||| ||||||| ||| || ||||| | || || |||||| Sbjct 200583 TCGCTAAAAACCTTTTTCGTTTCTTTGTGTAAATTAGAAATGGCGAGTCGCGCTGCTAGA 200642 Query 64065 ATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCC 64124 |||||||| || || |||| ||||| || || || |||| ||||| | | | ||| Sbjct 200643 ATGGCATAGTCTGGGTGTTTCGTAGTCATCGTTGCAGCAGTTTCTGCTGCTAAATTATCC 200702 Query 64125 AATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATA 64184 | ||| || || ||||| || ||||| ||| || | ||| | | || || | | Sbjct 200703 AGTTCCACTGTCGTTACGCCTGGATATAATCCGACGATCA-CTTTTTGGGTAATTACACA 200761 Query 64185 -GGATCTATATGATCCGTGTTTAAGCCATAGCACAATTTTCTAATACGAGACGTGATTTT 64243 ||||||| ||| ||||| | ||||| || | ||| ||||| |||||||| ||||| Sbjct 200762 GGGATCTACGAAATCTGTGTTCAGCCCATAACAAAGTTTACTAATGCGAGACGTTATTTT 200821 Query 64244 ATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGACAAACAT 64291 || || || | |||| | |||||| || || | |||||||| Sbjct 200822 GTCGAAGTGGATACTTTCGTGTCTTCCATTCCGCTTGACCACAAACAT 200869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626908692941760