Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq16628 536 1e-147 >seq16628 Length=231947 Score = 536 bits (594), Expect = 1e-147 Identities = 1252/1863 (67%), Gaps = 38/1863 (2%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || ||||| |||| || | |||| || | ||| |||| | |||||||||||||||| Sbjct 198618 TCCACTGTAAATTGGATGGCATTTACAGCAGGTTTGGTTCGTAAATAATACATTCCAGTT 198677 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || || || | | |||| || ||||||||||||| || |||||| | || || || | | Sbjct 198678 TTCAGTCCAAGTTTCCAACCACAAAAATGCATACTTGTAAGTTTTCCATACGTTGGCTGA 198737 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | || | ||| ||| |||||||||||| || | || || || | || || | |||| Sbjct 198738 GCGATGTGTATATTCAGTGATTGACTTTGGTCCACGAAAGCTCCGCGATCTGCCGACATT 198797 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 || |||||| || ||||| || ||||| || || ||| | ||||| ||| | | Sbjct 198798 TCCAAAATATTCTTCTGAGAAATTTCCCACACAGTGCGATACAACATTTTTA-ATTCTTT 198856 Query 37030 -GGTAAATCTAAATGTTGAATAGAACCATTATGTAACA--CAATTGTATTCTTTATGTCA 37086 |||| || | | ||||| ||||||||| | || || || || ||| |||| || Sbjct 198857 AGGTATATTCAGCTTTTGAACAGAACCATTGT-TAGCAATCAGTTC-ATTTTTTAAGTTG 198914 Query 37087 TTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAA 37146 | ||||| | | || | | ||| |||| || || ||||||| | |||||| Sbjct 198915 TCGTTCCATAAACCGAGACGCGTCAAATCTTTCAAGAGATGGTGATTTACTATCTGAAAT 198974 Query 37147 TCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTA 37206 |||||||| | ||| | | ||||| | ||||||||| |||||||| || | ||| ||| Sbjct 198975 TCTCCAGAAAGTACGCGCCGAGTATACACATTGCTAGTGTATGGTTCCATTGCCTCGTTA 199034 Query 37207 TTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTC 37266 |||| | || || | |||||||| || ||||||||||||| ||||| ||||| | Sbjct 199035 TTACCAAGAATCTGCGCAGTAGATGCTGTTGGCATTGGTGCTACGAGAAGACTATTGCGG 199094 Query 37267 AATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG-GTT 37325 | |||| | |||||||| | ||||| || ||||||||| | | || || ||| Sbjct 199095 ATTCCAAAGCTTTTAATTCTTTCTTTTAAAGCAGACCAATCCCACAGGTTTGAAGGTGTT 199154 Query 37326 -CTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCT 37384 | || ||||||||| || || || || |||| ||||| | | || |||| Sbjct 199155 ACATT--CCACATATCGTACTGAAGGATTCCTTGTGATACTGGACTACCAGGGTACGTCT 199212 Query 37385 CATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTG 37444 | || || || | |||||| ||||| ||||| ||| | || |||||||||||| Sbjct 199213 CGTACGGACCAAACTTTTTAGACAGTTCACAACTCTCTTCCAAAGCTCCATAATATATTG 199272 Query 37445 TTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATA 37504 |||| || |||| |||| | | ||||| || | ||||| | | | |||| Sbjct 199273 TTTCAAAGATTTTCTTATTAATTTCACAAGCTTCGTCACAGTCGAAAGGAAGTCTTAATA 199332 Query 37505 ATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAG 37564 | || || | || |||||||| || || ||||| || || || | ||| | | || | Sbjct 199333 AAATGAAAGCGTCGGCCAAACCTTGGACTCCGATTCCAATAGGGCGATGCCGCATGTTTG 199392 Query 37565 ATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAA 37624 | || ||| | |||||||||||| | ||| ||||||||||| | ||| || Sbjct 199393 AAAGTTTCGCTTCGGGAATTGGATAATAATTAACATCGATTATTTTATTCAAGTTTCTAG 199452 Query 37625 CTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGT-TATTATTAACAAAT 37683 || | | | || | | | ||| || || || || | || || || ||| ||| Sbjct 199453 TTACGACTCTAGTTACTTGACGCAATTTTTC-AAAATCGAAGTGTCCATGATAAACGAAT 199511 Query 37684 TTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGT 37743 | |||| | ||| || ||| |||||| || ||||| || || || | | | | Sbjct 199512 CGATTCAAAGCAATCGACGCTAAATTACACACGGCAACCTCGTCAACGGACGTGTACTCT 199571 Query 37744 ATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTT 37803 | || || ||||| |||||||| || | ||||| || | || ||||||| |||||| Sbjct 199572 ACGATTTCGGTACATAGATTACTACATTTTATTGTACCGACGTTTTTTTGATTCGATTTT 199631 Query 37804 TTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATA 37863 |||| || | ||||| |||| ||||| ||||| || ||| |||| | |||||| Sbjct 199632 CTATTGCAGGCGTCTTTGTATAACATATATGGCGTACCAGTTTCCGTTTGTGATTCGATA 199691 Query 37864 ATAGATTTCCATAAACTTCTTGCTTTAAC--GATCGCTTTAAtttttttCTTTGTTTCGT 37921 || | |||| | | ||| ||| || | ||| ||||| || |||| Sbjct 199692 ATTGCACTCCAGAGTTGTTGTGCACGAACTTGACGCCGATAA--CGTTTCTCCGTCTCGT 199749 Query 37922 ATTCTATATATAATTTGTTAAAATCATTCCCCCATACATC--GCA--TAATCCTGGACAT 37977 || | || | ||| | || || | || ||||||| ||| | | |||| | Sbjct 199750 ATCGAACGTAAAGTTTTTCGAAGTCTTCGCCGTATACATCTTGCAGGTGA----GGACTT 199805 Query 37978 TCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCA 38037 ||| ||||||||| | |||||| | |||||| ||| || | || ||| |||||||| Sbjct 199806 TCGTGTGGACACATCAACGACCATATTCCATCTTCTTCCACCCTTTTCATGAATAAATCG 199865 Query 38038 GGTACCCATAATGCAGTAAATAA-ATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTT 38096 || | ||| || | ||||| || ||| | ||| ||||| || || ||| || Sbjct 199866 GGAATCCACAA-ACCGTAAAAAAGATCACGTGCCCTACTCTCTTCTTTACCGGTATTTTT 199924 Query 38097 TCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGC 38156 | ||| | ||||||||| | ||| |||||||| ||||| | ||| || | || || Sbjct 199925 TTTTAGATCCAAAAAATCGAACACATCTGCGTGCCACGGTTCCAGATAGATGGCGATCGC 199984 Query 38157 TCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAA 38216 ||| |||||||| | || ||||||| | || | | ||||| ||||| | || || Sbjct 199985 TCCCGGTCTTTTGTTGCCACCCTGATCGACGTAACGTGCCGTGTTGTTATACACTCGTAG 200044 Query 38217 CATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCG 38276 ||| ||||| ||||| || ||| | || ||| | || | ||| ||| | || ||| || Sbjct 200045 CATGGGTACAATACCGTTCGATGTACCATTTGTTCCTGCTATGTAACTTCCAGAAGCACG 200104 Query 38277 TATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTT 38336 || || ||| | |||||||||||| || |||||| || | || || ||||| Sbjct 200105 AATGTTGTGTATGTTAATTCCTATTCCACCAGCCGATTTTGAAATGAGTGCACACTGTTT 200164 Query 38337 TAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGA 38396 | ||||| |||| |||||||| || || || || ||| | | || ||||||||| || Sbjct 200165 CAGTGTATCGTATATTCCTTCTATGCTATCGTCTTTCATTTGCAATAAAAAACAACTCGA 200224 Query 38397 CATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTT 38456 || ||| || ||||| || ||||| || | ||| |||||||| || | |||||||| Sbjct 200225 CAGTTGCGGTTTAGGAGTCCCAGCGTTGAAAAGTGTGGGAGATGCTTGCGTAAACCATTT 200284 Query 38457 TTCCGACAAATAATTATATGTTTCTATTACATCATCT-ATATCACCGCCGTGAATACCTA 38515 ||| |||| || || ||||| || || | || | ||| | |||||||| || | Sbjct 200285 TTCAGACATGAGGTTGTACGTTTCAATCGCA-CTGCTAAGATCGTCCCCGTGAATGCCAA 200343 Query 38516 GAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTT---ATTATTCTGTTTAA 38572 || || | ||| ||||| |||||||| | |||| | ||| |||| || || | Sbjct 200344 TCGAAACGCGCATAAGCATGTGTTGTGGCCGCTCTACAACTTTCCCATTAATC---TTGA 200400 Query 38573 GTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATA--TGAATAATCTCTATC 38630 ||| || || ||| ||||| || | |||||| || |||| ||| |||| | ||| Sbjct 200401 GTAAATGCGCACGTTCCAATGTCTTAAATCCAAAGTAGTTATAATTGA--AATCGCGATC 200458 Query 38631 GTA 38633 ||| Sbjct 200459 GTA 200461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466360847932480