Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq16628 589 3e-163 >seq16628 Length=231947 Score = 589 bits (652), Expect = 3e-163 Identities = 1502/2272 (66%), Gaps = 34/2272 (1%) Strand=Plus/Plus Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889 ||||||| ||| ||||| |||| | || ||||| || |||| ||| |||||||| Sbjct 198615 TTGTCCACTGTAAATTGGATGGCATTTACAGCAGGTTTGGTTCGTAAATAATACATTCCA 198674 Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 64949 ||||| || || || |||| || ||||||||||||| || ||||| ||| | || Sbjct 198675 GTTTTCAGTCCAAGTTTCCAACCACAAAAATGCATACTTGTAAGTTTTCCATACGTTGGC 198734 Query 64950 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 65009 | || || || ||||||| ||||||||||| || | ||| ||||| | ||||| | | Sbjct 198735 TGAGCGATGTGTATATTCAGTGATTGACTTTGGTCCACGAAAGCTCCGCGATCTGCCGAC 198794 Query 65010 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 65068 |||| | || |||| || | ||||||||| | ||| ||| ||| ||||| || Sbjct 198795 ATTTCCAAAATATTCTTCTGAGAAATTTCCCACACAGTGCGATACAACATTTTTAAT-TC 198853 Query 65069 TTCTGGAAGGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTC 65128 || || | || || |||| || ||| | || || | ||| || | | Sbjct 198854 TTTAGGTATATTCAGCTTTTGAACAGAACCATTGTTAGCAATCAGTTCATTTTTTAAGTT 198913 Query 65129 ATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAA 65188 || |||||||| || ||| || | | |||||| |||| |||| ||||| Sbjct 198914 GTCGTTCCATAAACCGAGACGCGTCAAATCTTTCAAGAGATGGTGATTTACTATCTGAAA 198973 Query 65189 TTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATT 65248 ||||||||| | ||| | |||||| || | ||| || || || ||||||| | ||| || Sbjct 198974 TTCTCCAGAAAGTACGCGCCGAGTATACACATTGCTAGTGTATGGTTCCATTGCCTCGTT 199033 Query 65249 ATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCT 65308 ||| || | ||| || ||||| ||||| || ||||| ||||| || | | |||||| | Sbjct 199034 ATTACCAAGAATCTGCGCAGTAGATGCTGTTGGCATTGGTGCTACGAGAAGACTATTGCG 199093 Query 65309 AAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTAC 65368 | || | || | ||| | ||||||| || ||||| ||| || | || ||| Sbjct 199094 GATTCCAAAGCTTTTAATTCTTTCTTTTAAAGCAGACCAATCCCACAGGTTTGAAGGTGT 199153 Query 65369 AACNNNNNNNNNNNNNNNTTGTAGAATACCGT----TACTGGCGTACGATCCTACATATG 65424 || || || || || | |||||| ||| | ||| | Sbjct 199154 TACATTCCACATATCGTACTGAAGGATTCCTTGTGATACTGGACTACCAGGGTAC----G 199209 Query 65425 TATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAA 65484 | ||||| || || ||| | || |||||||||||| | || || || || ||||| | Sbjct 199210 TCTCGTACGGACCAAACTTTTTAGACAGTTCACAACTCTCTTCCAAAGCTCCATAATATA 199269 Query 65485 TGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTA 65544 | ||||| ||||| |||||||| | || ||||| | || || ||| ||| Sbjct 199270 TTGTTTCAAAGATTTTCTTATTAATTTCACAAGCTTCGTCACAGTCGAAAGGAAGTCTTA 199329 Query 65545 AGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 65604 | | ||| || ||||| || || ||||| || || || || ||||| | ||| | | | | Sbjct 199330 ATAAAATGAAAGCGTCGGCCAAACCTTGGACTCCGATTCCAATAGGGCGATGCCGCATGT 199389 Query 65605 TAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 65664 | || | || ||||| ||||| ||||||||||||| ||| || |||||||| | |||| Sbjct 199390 TTGAAAGTTTCGCTTCGGGAATTGGATAATAATTAACATCGATTATTTTATTCAAGTTTC 199449 Query 65665 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCTATTACAA 65724 | | ||| | || | || ||| |||||| || | || || | || Sbjct 199450 TAGTTACGACTCTAGTTACTTGACGCAATTTTTCAAAATCGAAGTG----TCCATGATAA 199505 Query 65725 AC--ATG--TTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 65780 || || ||||| |||| || || | |||||| ||||| ||||| | | | || Sbjct 199506 ACGAATCGATTCAAAGCAATCGACGCTAAATTACACACGGCAACCTCGTCAACGGACGTG 199565 Query 65781 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 65840 || | || || || || || ||||||||||| || || || || | |||| |||||| Sbjct 199566 TACTCTACGATTTCGGTACATAGATTACTACATTTTATTGTACCGACGTTTTTTTGATTC 199625 Query 65841 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 65900 ||| | || || || || || || | || |||| ||||||||||| | || ||| Sbjct 199626 GATTTTCTATTGCAGGCGTCTTTGTATAACATATATGGCGTACCAGTTTCCGTTTGTGAT 199685 Query 65901 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTC-- 65958 || ||||| || |||||| | | || | | || || | |||||| Sbjct 199686 TCGATAATTGCACTCCAGAGTTGTTGTGCACGAACTT--GACGCCGATAACGTTTCTCCG 199743 Query 65959 TTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGAC 66018 | |||||| | || | | |||||| || || || | |||| | || ||||| Sbjct 199744 TCTCGTATCGAACGTAAAGTTTTTCGAAGTCTTCGCCGTATACATCTTGCAGGTGAGGAC 199803 Query 66019 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 66078 ||| | ||||||||||||||||| ||| || || | ||| | |||||| || | || Sbjct 199804 TTTCGTGTGGACACATCAACGACCATATTCCATCTTCTTCCACCCTTTTCATGAATAAAT 199863 Query 66079 CAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 66138 | |||||||| | | | ||| | ||| | | ||| || || || || ||||| | Sbjct 199864 CGGGAATCCACAAACCGTAAAAAAGATCACGTGCCCTACTCTCTTCTTTACCGGTATTTT 199923 Query 66139 TTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAA 66198 |||| ||||| | || | | | ||| ||||||||||||| || ||||| || Sbjct 199924 TTTTTAGATCCAAAAAATCGAACACATCTGCGTGCCACGGTTCCAGATAGATGGCGATCG 199983 Query 66199 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 66258 |||| || | |||||| || |||||||| | ||| | || ||||| ||||| |||| | Sbjct 199984 CTCCCGGTCTTTTGTTGCCACCCTGATCGACGTAACGTGCCGTGTTGTTATACACTCGTA 200043 Query 66259 ACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCAC 66318 ||| || | |||||| || ||||||||||| || || | || || |||||| |||| Sbjct 200044 GCATGGGTACAATACCGTTCGATGTACCATTTGTTCCTGCTATGTAACTTCCAGAAGCAC 200103 Query 66319 GAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 66378 |||| || || | |||||||| || ||| ||| || || | ||| || ||| Sbjct 200104 GAATGTTGTGTATGTTAATTCCTATTCCACCAGCCGATTTTGAAATGAGTGCACACTGTT 200163 Query 66379 TTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAG 66438 | | ||||| || || || ||||| ||||| || |||| | | || |||||| || | Sbjct 200164 TCAGTGTATCGTATATTCCTTCTATGCTATCGTCTTTCATTTGCAATAAAAAACAACTCG 200223 Query 66439 ACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 66498 ||| ||| | | ||| || || || || | || ||||| || ||||||||||||| Sbjct 200224 ACAGTTGCGGTTTAGGAGTCCCAGCGTTGAAAAGTGTGGGAGATGCTTGCGTAAACCATT 200283 Query 66499 TTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTA 66558 ||||||| | || |||||||| ||||| || | | ||| ||||| || | Sbjct 200284 TTTCAGACATGAGGTTGTACGTTTCAATCGCACTGCTAAGATCGTCCCCGTGAATGCCAA 200343 Query 66559 CTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACA 66618 | || ||||| | |||||| || || | || || | || || || || | | Sbjct 200344 TCGAAACGCGCATAAGCATGTGTTGTGGCCGCTCTACAACTTTCCCATTAATCTTGAGTA 200403 Query 66619 AGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTA 66676 | | | |||||| || ||||| ||||| ||||| || ||||| || || ||||| Sbjct 200404 AATGCGCACGTTCCAATGTCTTAAATCCAAAGTAGTTATAATTGAAA--TCGCGATCGTA 200461 Query 66677 AATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTA-CATCCATGGTAATACTTG 66735 || || |||||| | ||| || || |||| | | | ||| | | | Sbjct 200462 AACGATGGACGAGTTTAAAAAATCTGCATTATTCATAACGATCTTATATGTTTCTTC-GC 200520 Query 66736 AAATAATCGGAGAATGTTTCCCATTTTTAGGATTGA-CATAGTTGA-ATAAATCCTCCAT 66793 ||| || || | | ||| || || | ||| | |||| ||| ||||||| ||| Sbjct 200521 TAATCATGGGCGTAGATTTTCCGTTAGTTTCATTTACCATA--TGATATAAATCAGTCAT 200578 Query 66794 CACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGC 66853 ||| || ||||| | ||||| ||||||||||||| ||| || | ||| | || || || Sbjct 200579 CACCTCGCTAAAAACCTTTTTCGTTTCTTTGTGTAAATTAGAAATGGCGAGTCGCGCTGC 200638 Query 66854 TATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGT 66913 || ||||||||| || || |||| ||||| || || || |||| ||||| | | | Sbjct 200639 TAGAATGGCATAGTCTGGGTGTTTCGTAGTCATCGTTGCAGCAGTTTCTGCTGCTAAATT 200698 Query 66914 GTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTT 66973 |||| ||| || || ||||| || ||||| ||| ||| | ||| | | || || Sbjct 200699 ATCCAGTTCCACTGTCGTTACGCCTGGATATAATCCGACGATCA-CTTTTTGGGTAATTA 200757 Query 66974 AATA-GGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTGA 67032 | | ||||||| ||| ||||| | |||||||| | ||| ||||| ||||| || | Sbjct 200758 CACAGGGATCTACGAAATCTGTGTTCAGCCCATAACAAAGTTTACTAATGCGAGACGTTA 200817 Query 67033 TTTTATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGACAAACAT 67084 |||| || || || | |||| | |||||| || || | |||||||| Sbjct 200818 TTTTGTCGAAGTGGATACTTTCGTGTCTTCCATTCCGCTTGACCACAAACAT 200869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655132930197280