Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq329878 93.3 4e-14 seq8286 87.8 2e-12 >seq329878 Length=295997 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 20931 TCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTC 20990 || ||||||||| ||| | ||||||||| |||| ||||||||||||||| |||||| Sbjct 113618 TCCACGTGGTTGAGGTAGATGTGGGCGTCCCCCAGGGTGTGCACAAAGTC-CCCGGGCCG 113560 Query 20991 AGGCCC-GTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGG 21049 ||| || || | || | || | |||||||||||||||||||| ||||| || || Sbjct 113559 TTTCCCGGTCACCTTGGCCACCATGTGGGTCAGGAGGGCGTAGCTGGCAATGTTGAAAGG 113500 Query 21050 GACCCCGAGGCCC 21062 || || |||||| Sbjct 113499 CACGCCCAGGCCC 113487 >seq8286 Length=1257 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 20931 TCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTC 20990 || |||||||| ||||| |||||| || || || |||| ||||| || || || Sbjct 437 TCCACGTGGTTAAGGTAAATGTGGGCATCGCCTAAATTGTGAACAAATTCACCAGGTCGT 496 Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050 || || || | || |||| | || || || ||||| || || ||||||||||| Sbjct 497 TTTCCAGTCACCTTTGCCATCATGTGTGTGAGAAGAGCGTAACTCGCAATGTTAAACGGT 556 Query 21051 ACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC 21110 || || | ||||||||||| || | ||| ||||| || || || ||||| | | Sbjct 557 ACACCCAATCCCATGTCGGCAGAACGCTGATACAGTTGACACGAGAGCTCATCATCGTCT 616 Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCAT 21151 ||||| ||||| |||| |||||| || || || |||| Sbjct 617 ACGTAGAACTGTGCCAAACAGTGACATGGTGGTAGGACCAT 657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425849646068160