Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq118272 136 4e-27 >seq118272 Length=246527 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| || | ||||| || |||||||| || || || ||||| Sbjct 50323 GCCACCGCGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATATTGTAATCCGA 50264 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | ||||||||||| || || ||| |||||||||| |||||||||||||| Sbjct 50263 CAGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGAGG 50204 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCA 139715 |||||||| ||||| ||| |||| | || | | || | ||||||| ||||||||| Sbjct 50203 AATGCCTTCCTTGTCC-TGAATTTTGGCCTTCACGTTCTCGATTGTGTCGCTGGGCTCCA 50145 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | ||||| ||||| | ||||| ||||| || ||||| Sbjct 50144 CCTCCAGTGTGATTGTCTTACCGGTGAGGGTTTTGACGAAGATCTGCAT 50096 Score = 129 bits (142), Expect = 6e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||||||||| || ||||| || || || |||| ||||||||||| || ||| Sbjct 50748 GTAGACTCTTTCTGGATGTTGTAGTCCGACAGGGTGCGACCATCTTCGAGCTGCTTGCCA 50689 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 ||| |||||||||| |||||||||||||| || ||||| ||||| ||| |||| | || Sbjct 50688 GCAAAGATCAGACGCTGCTGATCGGGAGGAATACCTTCCTTGTC-CTGAATTTTCGCCTT 50630 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| ||||||||||||| | || | ||||||||||||| || Sbjct 50629 CACGTTCTCGATCGTGTCACTGGGCTCCACCTCCAGTGTGATAGTCTTGCCGGTCAGAGT 50570 Query 139747 TTTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 50569 CTTAACGAAGATCTGCAT 50552 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | |||| || | ||| | || ||||| || |||||||| || ||| Sbjct 49867 GCCTCCGCGCAGCCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGA 49808 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| |||||| ||||| || || || |||||||||||||||| ||||| || Sbjct 49807 CAAGGTGCGTCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGCGG 49748 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || || || ||||| ||| | || | || | | ||| | |||||| | ||||||| Sbjct 49747 GATCCCCTCCTTGTC-TTGAATCTTAGCCTTCACGTTTTCAATCGTGTCGCTCGGCTCCA 49689 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | || || ||||||| ||||| ||||| || ||||| Sbjct 49688 CCTCGAGCGTGATGGTTTTCCCGGTCAGGGTTTTGACGAAGATCTGCAT 49640 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| ||| | ||| | || || ||||| || ||||| || || || || | | Sbjct 51222 CGCAGAACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCCGACAGGGTACGACCG 51163 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || || ||| |||| ||||| || || || ||||| || ||||| ||| Sbjct 51162 TCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGAGGAATCCCTTCCTTG 51103 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || ||| | | ||| | ||||| ||||||| ||||| | || | Sbjct 51102 TCCTGGATCTTGGCTTTCACGTTTTCGATGGTGTCACTGGGCTCGACCTCGAGAGTAATG 51043 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||||| |||||||| || |||||||| Sbjct 51042 GTCTTGCCGGTCAGAGTTTTTACAAAAATTTGCAT 51008 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || |||||||| || ||||| || || || |||| ||| ||||| ||| Sbjct 50982 TGAAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGCGTGCGGCCGTCCTCGAGTTGT 50923 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || || |||| ||||| ||||| || || || ||||| || ||||| ||| ||| Sbjct 50922 TTGCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCTTGGATCTTT 50863 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | ||| | || || ||||||| || || | ||| | |||||||||||| Sbjct 50862 GCCTTGACGTTTTCGATGGTATCACTGGGCTCAACTTCGAGGGTGATGGTCTTGCCGGTC 50803 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | || ||||| || |||||||| Sbjct 50802 AGAGTCTTTACAAAGATTTGCAT 50780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493772854006400