Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq16628 672 0.0 >seq16628 Length=231947 Score = 672 bits (744), Expect = 0.0 Identities = 1523/2271 (67%), Gaps = 32/2271 (1%) Strand=Plus/Plus Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768 ||||||| ||| ||||| |||| | || ||||| || |||| ||| |||||||| Sbjct 198615 TTGTCCACTGTAAATTGGATGGCATTTACAGCAGGTTTGGTTCGTAAATAATACATTCCA 198674 Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828 ||||| || || || |||| || | ||||||||||| || ||||| ||| | || Sbjct 198675 GTTTTCAGTCCAAGTTTCCAACCACAAAAATGCATACTTGTAAGTTTTCCATACGTTGGC 198734 Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888 | || || || ||||||| ||||||||||| || | ||| ||||| | ||||| | | Sbjct 198735 TGAGCGATGTGTATATTCAGTGATTGACTTTGGTCCACGAAAGCTCCGCGATCTGCCGAC 198794 Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 78947 |||| | || |||| || | ||||||||| | ||| ||| ||| ||||| || Sbjct 198795 ATTTCCAAAATATTCTTCTGAGAAATTTCCCACACAGTGCGATACAACATTTTTAAT-TC 198853 Query 78948 TTCTGGAAGGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTC 79007 || || | || || |||| || ||| | || || | ||| || | | Sbjct 198854 TTTAGGTATATTCAGCTTTTGAACAGAACCATTGTTAGCAATCAGTTCATTTTTTAAGTT 198913 Query 79008 TTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAA 79067 || |||||||| || ||| || | | |||||| |||| |||| ||||| Sbjct 198914 GTCGTTCCATAAACCGAGACGCGTCAAATCTTTCAAGAGATGGTGATTTACTATCTGAAA 198973 Query 79068 TTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATT 79127 ||||||||| | ||| | |||||| || | ||| || || |||||||||| | || || Sbjct 198974 TTCTCCAGAAAGTACGCGCCGAGTATACACATTGCTAGTGTATGGTTCCATTGCCTCGTT 199033 Query 79128 ATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCT 79187 ||| || | ||| || ||||| ||||| |||||||| ||||| || | | |||||| | Sbjct 199034 ATTACCAAGAATCTGCGCAGTAGATGCTGTTGGCATTGGTGCTACGAGAAGACTATTGCG 199093 Query 79188 AAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGAC 79247 | || | | | ||| | ||||||| || ||||||||| || | || || Sbjct 199094 GATTCCAAAGCTTTTAATTCTTTCTTTTAAAGCAGACCAATCCCACAGGTTTGAAGGTGT 199153 Query 79248 AACATTCCAAAGATCATATTGTAGAATACCGT----TACTAGCGTATGATCCTGTGTATG 79303 |||||||| | ||| || || || || || | |||| | || || | ||| | Sbjct 199154 TACATTCCACATATCGTACTGAAGGATTCCTTGTGATACTGGACTA----CCAGGGTACG 199209 Query 79304 TTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAA 79363 | || || || || ||||| | | |||||||||| | || || ||||| ||||| | Sbjct 199210 TCTCGTACGGACCAAACTTTTTAGACAGTTCACAACTCTCTTCCAAAGCTCCATAATATA 199269 Query 79364 TGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTA 79423 | ||||| || || |||||||| | || ||||| | || || ||| ||| Sbjct 199270 TTGTTTCAAAGATTTTCTTATTAATTTCACAAGCTTCGTCACAGTCGAAAGGAAGTCTTA 199329 Query 79424 AGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 79483 | | ||| || ||||| || || ||||| || || || || ||||| | ||| | | | | Sbjct 199330 ATAAAATGAAAGCGTCGGCCAAACCTTGGACTCCGATTCCAATAGGGCGATGCCGCATGT 199389 Query 79484 TAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCC 79543 | |||| || ||||| ||||| ||||||||||||| ||| || |||||||| | || | Sbjct 199390 TTGAAAGTTTCGCTTCGGGAATTGGATAATAATTAACATCGATTATTTTATTCAAGTTTC 199449 Query 79544 TGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATTACAA 79603 | || ||| | || | | ||| |||||| || |||||| || | Sbjct 199450 TAGTTACGACTCTAGTTACTTGACGCAATTTTTCAAAATCGAAGTGTCCATGATAAACGA 199509 Query 79604 ACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 79663 | ||||| || | || || | |||||| ||||| ||||| | | | || || | Sbjct 199510 ATCGATTCAAAGCAATCGACGCTAAATTACACACGGCAACCTCGTCAACGGACGTGTACT 199569 Query 79664 GTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCT 79723 || ||||| || || || |||||||| || || || || | |||| |||||| | Sbjct 199570 CTACGATTTCGGTACATAGATTACTACATTTTATTGTACCGACGTTTTTTTGATTCGATT 199629 Query 79724 TTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTA 79783 || | || || || || || || | || | || ||||||||||| | || ||||| | Sbjct 199630 TTCTATTGCAGGCGTCTTTGTATAACATATATGGCGTACCAGTTTCCGTTTGTGATTCGA 199689 Query 79784 TAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTC--TTTC 79841 |||| || |||||| | | || | | ||| || | |||||| | || Sbjct 199690 TAATTGCACTCCAGAGTTGTTGTGCACGAACTT--GACGCCGATAACGTTTCTCCGTCTC 199747 Query 79842 GTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTC 79901 |||| | || | | |||||| || || || | ||||| | | ||||| ||| Sbjct 199748 GTATCGAACGTAAAGTTTTTCGAAGTCTTCGCCGTATACATCTTGCAGGTGAGGACTTTC 199807 Query 79902 GTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGG 79961 || ||||||||||||||||| |||||| || | || | |||||| || | ||| || Sbjct 199808 GTGTGGACACATCAACGACCATATTCCATCTTCTTCCACCCTTTTCATGAATAAATCGGG 199867 Query 79962 AATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTT 80021 |||||| | | | ||| ||||| | | ||| ||| || || || ||||| ||||| Sbjct 199868 AATCCACAAACCGTAAAAAAGATCACGTGCCCTACTCTCTTCTTTACCGGTATTTTTTTT 199927 Query 80022 AAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCC 80081 ||||| | || | | | ||| | ||||||||||||| || ||||| || |||| Sbjct 199928 TAGATCCAAAAAATCGAACACATCTGCGTGCCACGGTTCCAGATAGATGGCGATCGCTCC 199987 Query 80082 CGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 80141 ||||| |||||| || |||||||| | ||| | || ||||| ||||| |||| | ||| Sbjct 199988 CGGTCTTTTGTTGCCACCCTGATCGACGTAACGTGCCGTGTTGTTATACACTCGTAGCAT 200047 Query 80142 TGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT 80201 || | |||||| || ||||||||||| || || | || || |||||| |||||||| Sbjct 200048 GGGTACAATACCGTTCGATGTACCATTTGTTCCTGCTATGTAACTTCCAGAAGCACGAAT 200107 Query 80202 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 80261 || || | |||||||| || ||| ||| || || | ||| || |||| | Sbjct 200108 GTTGTGTATGTTAATTCCTATTCCACCAGCCGATTTTGAAATGAGTGCACACTGTTTCAG 200167 Query 80262 CGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACAT 80321 ||||| || || || ||||||||||| || |||| | | || |||||| || |||| Sbjct 200168 TGTATCGTATATTCCTTCTATGCTATCGTCTTTCATTTGCAATAAAAAACAACTCGACAG 200227 Query 80322 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 80381 ||| | | ||| || || || || | || ||||| || ||||||||||||||||| Sbjct 200228 TTGCGGTTTAGGAGTCCCAGCGTTGAAAAGTGTGGGAGATGCTTGCGTAAACCATTTTTC 200287 Query 80382 AGACAGTAGATTGTACGTCTCAATAG--CTGATTCTAT-ATCCCATTGATGAATTCCTAC 80438 ||||| || |||||||| ||||| | ||| | || |||| ||||| || | Sbjct 200288 AGACATGAGGTTGTACGTTTCAATCGCACTGCTAAGATCGTCCC---CGTGAATGCCAAT 200344 Query 80439 CGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAA 80498 || || ||||| | |||||| || || | || || | || ||| || || | || Sbjct 200345 CGAAACGCGCATAAGCATGTGTTGTGGCCGCTCTACAACTTTCCCATTAATCTTGAGTAA 200404 Query 80499 GTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAA 80556 | | |||||| || ||||| ||||| ||||| || ||||| || || |||||| Sbjct 200405 ATGCGCACGTTCCAATGTCTTAAATCCAAAGTAGTTATAATTGAAA--TCGCGATCGTAA 200462 Query 80557 ATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTA-CATCCATGGTGATACTTGA 80615 | || |||||| | ||| || || |||| | | | ||| | | | Sbjct 200463 ACGATGGACGAGTTTAAAAAATCTGCATTATTCATAACGATCTTATATGTTTCTTC-GCT 200521 Query 80616 AATAATCGGAGAATGTTTCCCATT-TTTAGGATTAACATAGTTGA-ATAAATCCTCCATC 80673 ||| || || | | ||| || || || ||| |||| ||| ||||||| |||| Sbjct 200522 AATCATGGGCGTAGATTTTCCGTTAGTTTCATTTACCATA--TGATATAAATCAGTCATC 200579 Query 80674 ACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCT 80733 || || ||||| | ||||| ||||| ||||||| ||| || | ||| | || || ||| Sbjct 200580 ACCTCGCTAAAAACCTTTTTCGTTTCTTTGTGTAAATTAGAAATGGCGAGTCGCGCTGCT 200639 Query 80734 AAAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTG 80793 | ||||||||| ||||| |||| ||||| || || || |||| ||||| | | | Sbjct 200640 AGAATGGCATAGTCTGGGTGTTTCGTAGTCATCGTTGCAGCAGTTTCTGCTGCTAAATTA 200699 Query 80794 TCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTA 80853 |||| ||| || || ||||| || ||||| ||| ||| | ||| | | || || Sbjct 200700 TCCAGTTCCACTGTCGTTACGCCTGGATATAATCCGACGATCA-CTTTTTGGGTAATTAC 200758 Query 80854 ATA-GGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGAT 80912 | | ||||||| ||| ||||| | |||||||| | ||| ||||| |||||||| || Sbjct 200759 ACAGGGATCTACGAAATCTGTGTTCAGCCCATAACAAAGTTTACTAATGCGAGACGTTAT 200818 Query 80913 TTTATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGACAAACAT 80963 ||| || || || | |||| | |||||| || || | |||||||| Sbjct 200819 TTTGTCGAAGTGGATACTTTCGTGTCTTCCATTCCGCTTGACCACAAACAT 200869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 714951367806880