Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq118272 84.2 2e-11 >seq118272 Length=246527 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 42931 TTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGT 42990 ||||| || |||| ||||| |||| || | || ||||||||||| || | |||||| Sbjct 51186 TTGTAGTCCGACAGGGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGT 51127 Query 42991 TGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCG 43050 || || | || | ||||| || || |||| |||| || | | | ||||| Sbjct 51126 TGGTCCGGAGGAATCCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTTTCGATGGTGTCA 51067 Query 43051 CCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | | |||||| || | || || || || ||||| |||||||| |||||||||||||| Sbjct 51066 CTGGGCTCGACCTCGAGAGTAATGGTCTTGCCGGTCAGAGTTTTTACAAAAATTTGCAT 51008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379652222614536