Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq16628 605 4e-168 >seq16628 Length=231947 Score = 605 bits (670), Expect = 4e-168 Identities = 1505/2271 (66%), Gaps = 32/2271 (1%) Strand=Plus/Plus Query 70792 TTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCT 70851 ||||||| |||||| || |||| | || | ||| || |||| ||| ||||| || Sbjct 198615 TTGTCCACTGTAAATTGGATGGCATTTACAGCAGGTTTGGTTCGTAAATAATACATTCCA 198674 Query 70852 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGA 70911 ||||| || || || |||| || ||||||||||||| || ||||| ||| | || Sbjct 198675 GTTTTCAGTCCAAGTTTCCAACCACAAAAATGCATACTTGTAAGTTTTCCATACGTTGGC 198734 Query 70912 TCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 70971 | || ||||| ||||||| || |||||||| || | ||| ||||| | ||||| | | Sbjct 198735 TGAGCGATGTGTATATTCAGTGATTGACTTTGGTCCACGAAAGCTCCGCGATCTGCCGAC 198794 Query 70972 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 71030 |||| | || |||| || | ||||||||| | ||| ||| ||| ||||| || Sbjct 198795 ATTTCCAAAATATTCTTCTGAGAAATTTCCCACACAGTGCGATACAACATTTTTAAT-TC 198853 Query 71031 TTCTGGAAGGTTTGTATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTC 71090 || || | || || |||| || ||| | ||||| | |||||| | | Sbjct 198854 TTTAGGTATATTCAGCTTTTGAACAGAACCATTGTTAGCAATCAGTTCATTTTTTAAGTT 198913 Query 71091 TTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAA 71150 || |||||||| || ||| || | | |||||| |||| |||| ||||| Sbjct 198914 GTCGTTCCATAAACCGAGACGCGTCAAATCTTTCAAGAGATGGTGATTTACTATCTGAAA 198973 Query 71151 TTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATT 71210 ||||||||| | ||| | ||||| || | ||| || || || ||||||| || ||| || Sbjct 198974 TTCTCCAGAAAGTACGCGCCGAGTATACACATTGCTAGTGTATGGTTCCATTGCCTCGTT 199033 Query 71211 ATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCT 71270 ||| || | ||| || ||||| ||||| || ||||| ||||| || | |||||||| | Sbjct 199034 ATTACCAAGAATCTGCGCAGTAGATGCTGTTGGCATTGGTGCTACGAGAAGACTATTGCG 199093 Query 71271 AAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTAC 71330 | ||| | ||| | ||||||| || ||||| ||| || | || ||| Sbjct 199094 GATTCCAAAGCTTTTAATTCTTTCTTTTAAAGCAGACCAATCCCACAGGTTTGAAGGTGT 199153 Query 71331 AACNNNNNNNNNNNNNNNNNNNNNNATGCCGT----TACTAGCGTATGATCCTGCATATG 71386 || || || | |||| | || || | || | Sbjct 199154 TACATTCCACATATCGTACTGAAGGATTCCTTGTGATACTGGACTA----CCAGGGTACG 199209 Query 71387 TATCGTATGGTCCTT-CTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAA 71445 | ||||| || || |||||| | | |||||||||||| | || || ||||||||||| Sbjct 199210 TCTCGTACGGACCAAACTTTTTAGAC-AGTTCACAACTCTCTTCCAAAGCTCCATAATAT 199268 Query 71446 ATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTT 71505 || ||||| || || |||||||| | || ||||| | || || ||| || Sbjct 199269 ATTGTTTCAAAGATTTTCTTATTAATTTCACAAGCTTCGTCACAGTCGAAAGGAAGTCTT 199328 Query 71506 AAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTA 71565 || | ||| || ||||| || || ||||| || || || || ||||| | || | | | Sbjct 199329 AATAAAATGAAAGCGTCGGCCAAACCTTGGACTCCGATTCCAATAGGGCGATGCCGCATG 199388 Query 71566 TTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 71625 || |||| || ||||| ||||| ||||||||||||| ||| || |||||||| | ||| Sbjct 199389 TTTGAAAGTTTCGCTTCGGGAATTGGATAATAATTAACATCGATTATTTTATTCAAGTTT 199448 Query 71626 CTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTATTACA 71685 || || ||| | || | | ||| |||||| || |||| || Sbjct 199449 CTAGTTACGACTCTAGTTACTTGACGCAATTTTTCAAAATCGAAGTGTCCATGATAAACG 199508 Query 71686 AACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATAT 71745 || ||||| |||| || || | |||||| ||||| ||||| | | | | || Sbjct 199509 AATCGATTCAAAGCAATCGACGCTAAATTACACACGGCAACCTCGTCAACGGACGTGTAC 199568 Query 71746 TGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTC 71805 | || ||||| || || ||||||||||| || || || || | |||| |||||| Sbjct 199569 TCTACGATTTCGGTACATAGATTACTACATTTTATTGTACCGACGTTTTTTTGATTCGAT 199628 Query 71806 TTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCT 71865 ||| | || || || || || || | ||| | || ||||||||||| | || ||||| Sbjct 199629 TTTCTATTGCAGGCGTCTTTGTATAACATATATGGCGTACCAGTTTCCGTTTGTGATTCG 199688 Query 71866 ATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCG 71925 ||||| || |||||| | | || | | | | || | || || | ||| Sbjct 199689 ATAATTGCACTCCAGAGTTGTTGTGCACGAACTTGACGCCGATAACGTTTCTCCGTCTCG 199748 Query 71926 TATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCA 71985 ||| | || | | |||||| || || || | ||| | | ||||| ||| Sbjct 199749 TATCGAACGTAAAGTTTTTCGAAGTCTTCGCCGTATACATCTTGCAGGTGAGGACTTTCG 199808 Query 71986 TTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGA 72045 | ||||||||||| ||||| |||||| || | || | |||||| || | ||| ||| Sbjct 199809 TGTGGACACATCAACGACCATATTCCATCTTCTTCCACCCTTTTCATGAATAAATCGGGA 199868 Query 72046 ATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTA 72105 ||||| | | | ||| ||||| | | ||| ||| || || || ||||| ||||| Sbjct 199869 ATCCACAAACCGTAAAAAAGATCACGTGCCCTACTCTCTTCTTTACCGGTATTTTTTTTT 199928 Query 72106 AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCC 72165 ||||| | || | | | ||| | ||||||||||||| || ||||| || ||||| Sbjct 199929 AGATCCAAAAAATCGAACACATCTGCGTGCCACGGTTCCAGATAGATGGCGATCGCTCCC 199988 Query 72166 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 72225 || | |||||| || |||||||| | ||| | || ||||| ||||| |||| | ||| Sbjct 199989 GGTCTTTTGTTGCCACCCTGATCGACGTAACGTGCCGTGTTGTTATACACTCGTAGCATG 200048 Query 72226 GGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA 72285 || | |||||| || |||| |||||| || || | || || |||||| |||||||| Sbjct 200049 GGTACAATACCGTTCGATGTACCATTTGTTCCTGCTATGTAACTTCCAGAAGCACGAATG 200108 Query 72286 TTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 72345 ||| || | |||||||| || ||| ||| || || | ||| || |||| | Sbjct 200109 TTGTGTATGTTAATTCCTATTCCACCAGCCGATTTTGAAATGAGTGCACACTGTTTCAGT 200168 Query 72346 GTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT 72405 ||||| || || || ||||| ||||| || |||| | | || |||||| || |||| | Sbjct 200169 GTATCGTATATTCCTTCTATGCTATCGTCTTTCATTTGCAATAAAAAACAACTCGACAGT 200228 Query 72406 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 72465 || | | ||| || || || || | || ||||| || |||||||||||||||||| Sbjct 200229 TGCGGTTTAGGAGTCCCAGCGTTGAAAAGTGTGGGAGATGCTTGCGTAAACCATTTTTCA 200288 Query 72466 GACAGTAGATTGTACGTCTCAATAG--CTGATTCTAT-ATCCCATTGATGTATTCCTACC 72522 |||| || |||||||| ||||| | ||| | || |||| ||| || || | | Sbjct 200289 GACATGAGGTTGTACGTTTCAATCGCACTGCTAAGATCGTCCCCGTGA---ATGCCAATC 200345 Query 72523 GCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAG 72582 | || ||||| | ||| || || || | || || | || ||| || || | || Sbjct 200346 GAAACGCGCATAAGCATGTGTTGTGGCCGCTCTACAACTTTCCCATTAATCTTGAGTAAA 200405 Query 72583 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAA 72640 | | |||||| || ||||| ||||| ||||| || ||||| || || ||||||| Sbjct 200406 TGCGCACGTTCCAATGTCTTAAATCCAAAGTAGTTATAATTGAAA--TCGCGATCGTAAA 200463 Query 72641 TAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT--GA 72698 || ||| || | ||| || || |||| || | || || | ||| Sbjct 200464 CGATGGACGAGTTTAAAAAATCTGCATTATTCATAACGATCT-TAT-ATGTTTCTTCGCT 200521 Query 72699 AATAATCGGAGAATGTTTCCCATT-TTTAGGATTAACATAGTTGA-ATAAATCCTCCATC 72756 ||| || || | | ||| || || || ||| |||| ||| ||||||| |||| Sbjct 200522 AATCATGGGCGTAGATTTTCCGTTAGTTTCATTTACCATA--TGATATAAATCAGTCATC 200579 Query 72757 ACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCT 72816 || || ||||| | ||||| ||||| ||||||| ||| || | ||| | || || ||| Sbjct 200580 ACCTCGCTAAAAACCTTTTTCGTTTCTTTGTGTAAATTAGAAATGGCGAGTCGCGCTGCT 200639 Query 72817 AGAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTG 72876 ||||||||||| ||||| |||| ||||| || || || |||||||||| | | | Sbjct 200640 AGAATGGCATAGTCTGGGTGTTTCGTAGTCATCGTTGCAGCAGTTTCTGCTGCTAAATTA 200699 Query 72877 TCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTA 72936 |||| ||| || || ||||| || ||||| ||| ||| | ||| | | || || Sbjct 200700 TCCAGTTCCACTGTCGTTACGCCTGGATATAATCCGACGATCA-CTTTTTGGGTAATTAC 200758 Query 72937 ATA-GGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGAT 72995 | | ||||||| ||| ||||| | |||||||| | ||| ||||| |||||||| || Sbjct 200759 ACAGGGATCTACGAAATCTGTGTTCAGCCCATAACAAAGTTTACTAATGCGAGACGTTAT 200818 Query 72996 TTTATCAAACATAACATTTTCCCGGCATCCATTTCGTTTAACGACAAACAT 73046 ||| || || | | |||| | | |||||| || || || |||||||| Sbjct 200819 TTTGTCGAAGTGGATACTTTCGTGTCTTCCATTCCGCTTGACCACAAACAT 200869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 668039442933920