Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq118272 118 1e-21 seq16628 118 1e-21 >seq118272 Length=246527 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | |||| || | ||| | ||||| ||||| || |||||||| || Sbjct 50779 GCCACCACGCAGTCGCAGCACCAGATGGAGGGTAGACTCTTTCTGGATGTTGTAGTCCGA 50720 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| |||||||| || || |||||| |||||||||| |||||||||||||| Sbjct 50719 CAGGGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCGGGAGG 50660 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| |||||| || | | || | |||||| |||| || || Sbjct 50659 AATACCTTCCTTGTCCTGAATTTTCGCCTTCACGTTCTCGATCGTGTCACTGGGCTCCAC 50600 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||||||||||| || || ||||| || ||||| Sbjct 50599 CTCCAGTGTGATAGTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCAT 50552 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||||| || | |||| || || ||||| || || |||||||| Sbjct 50323 GCCACCGCGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATATTGTAATCCGA 50264 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || | |||||||| || || || ||| |||||||||| |||||||||||||| Sbjct 50263 CAGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGAGG 50204 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| |||||| || | | || | ||||| |||| || || Sbjct 50203 AATGCCTTCCTTGTCCTGAATTTTGGCCTTCACGTTCTCGATTGTGTCGCTGGGCTCCAC 50144 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| ||||| | ||||| ||||| || ||||| Sbjct 50143 CTCCAGTGTGATTGTCTTACCGGTGAGGGTTTTGACGAAGATCTGCAT 50096 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | |||| || | ||||| || || ||||| || |||||||| || Sbjct 51007 GCCACCACGAAGTCGCAGCACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 50948 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| ||| ||||||||||| || || |||| ||||| ||||| || || || Sbjct 50947 CAGCGTGCGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGTGG 50888 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| || ||||| || ||| || | | ||| | || || |||| || || Sbjct 50887 AATGCCCTCCTTGTCTTGGATCTTTGCCTTGACGTTTTCGATGGTATCACTGGGCTCAAC 50828 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | || | ||||||||||||| || ||||| || |||||||| Sbjct 50827 TTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTTACAAAGATTTGCAT 50780 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| ||| | || | || |||||||| || |||||||| || || || | | Sbjct 51222 CGCAGAACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCCGACAGGGTACGACCG 51163 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 || || || || || || ||| |||| ||||| || || || ||||| || ||||| ||| Sbjct 51162 TCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGAGGAATCCCTTCCTTG 51103 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || || ||| | | ||| | ||||| |||| || || || | ||| | Sbjct 51102 TCCTGGATCTTGGCTTTCACGTTTTCGATGGTGTCACTGGGCTCGACCTCGAGAGTAATG 51043 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||||||||| |||||||| || |||||||| Sbjct 51042 GTCTTGCCGGTCAGAGTTTTTACAAAAATTTGCAT 51008 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | || | ||| || || | || || || || || |||||||| || Sbjct 50551 GCCACCGCGGAGCCGGAGAACCAAGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 50492 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| ||||||||||| || || || |||||| ||| |||||||| || || Sbjct 50491 CAGGGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAACGCTGCTGATCCGGGGG 50432 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||||| ||| | | ||| | ||||| |||| || || Sbjct 50431 GATCCCTTCCTTGTCCTGGATTTTGGCTTTGACATTTTCAATTGTGTCACTGGGCTCGAC 50372 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | || | || |||||||| | ||||| ||||| || ||||| Sbjct 50371 TTCCAGCGTGATGGTTTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 50324 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | |||| || | || | || || || || || |||||||| ||| Sbjct 49867 GCCTCCGCGCAGCCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGA 49808 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| |||||| || || || || || |||||||||||||||| ||||| || Sbjct 49807 CAAGGTGCGTCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGCGG 49748 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || ||||| ||| || || | | ||| | |||||| | || || || Sbjct 49747 GATCCCCTCCTTGTCTTGAATCTTAGCCTTCACGTTTTCAATCGTGTCGCTCGGCTCCAC 49688 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || ||||||| ||||| ||||| || ||||| Sbjct 49687 CTCGAGCGTGATGGTTTTCCCGGTCAGGGTTTTGACGAAGATCTGCAT 49640 Score = 82.4 bits (90), Expect = 8e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 ||||| || || | ||||| || | || | || || || ||||| |||||||||||| Sbjct 51465 TGGCCACCACGGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCG 51406 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 || || | ||||| | || || |||||| |||| ||||| ||||| || || Sbjct 51405 GACAGGGTTCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCCGGG 51346 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || |||||||| ||||| || || || | | || | ||||| |||| || Sbjct 51345 GGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCG 51286 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || | || | ||||| || |||| || || ||||| |||||||| Sbjct 51285 ACCTCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATTTGCAT 51236 >seq16628 Length=231947 Score = 118 bits (130), Expect = 1e-21 Identities = 472/732 (64%), Gaps = 37/732 (5%) Strand=Plus/Plus Query 156872 AATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAtttt 156931 || || |||||||||||||| | || || || || || ||||| ||||| || || | Sbjct 199338 AAAGCGTCGGCCAAACCTTGGACTCCGATTCCAATAGGGCGATGCCGCATGTTTGAAAGT 199397 Query 156932 tttGCAGTTTC---AATAGGGTAGAAATTGCGATCAATAATTTTATTCAAACTATCCACT 156988 || || ||| ||| || || |||| ||| || ||||||||||| | || | | Sbjct 199398 TTCGC---TTCGGGAATTGGATAATAATTAACATCGATTATTTTATTCAAGTT-TCTAGT 199453 Query 156989 -ACATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAAGTATC-ATTATTGATATATT 157046 || | | || ||||| || |||||| || || || || || | || Sbjct 199454 TACGACTCTAGTTACTTGACGCAATTTTTCAAAATCGAA-GTGTCCATGATAAACGAATC 199512 Query 157047 TATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTC---GGGCGCGCAATATT 157103 ||| | ||||||||||||| |||||| |||||| ||||| || || | || | Sbjct 199513 GATTCAAAGCAATCGACGCTAAATTACACACGGCAACCTCGTCAACGGACGTG---TACT 199569 Query 157104 GTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTT 157163 ||| ||||| | ||| | ||| || |||||||| ||| || ||||||| || Sbjct 199570 CTACGATTTCGGTACATAGATTACTACATTTTATTGTACCGACGTTTTTTTGATTCGATT 199629 Query 157164 TGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTA 157223 | | ||||| ||||| ||||||||||| || || || || ||||| | ||| ||| | Sbjct 199630 TTCTATTGCAGGCGTCTTTGTATAACATATATGGCGTACCAGTTTCCGTTTGTGATTCGA 199689 Query 157224 TGATGTTGC------GCATTAATGTAACCGCGGGCATTTGCTCGCGAAACTGGCCTTTAT 157277 | | |||| | || ||| || | | ||| ||| | | ||| | Sbjct 199690 TAA--TTGCACTCCAGAGTTGTTGT----GCACGAACTTGACGCCGA---TAACGTTTCT 199740 Query 157278 C---CTCGTAATGTTTGTACCAGTATTCAAAGTCATCACCATACGTATCGTTGAGCTTAG 157334 | |||||| | ||| | ||| ||||| || || || ||| | || | || Sbjct 199741 CCGTCTCGTATCGAACGTAAAGTTTTTCGAAGTCTTCGCCGTATACATCTTGCAGGTGAG 199800 Query 157335 GACACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCATAAATA 157394 ||| |||| |||||||| || |||||||| || | |||||| || | |||||| |||| Sbjct 199801 GACTTTCGTGTGGACACATCAACGACCATATTCCATCTTCTTCCACCCTTTTCATGAATA 199860 Query 157395 TATCGGGAACCCATAAAGCGTTCATCAAATCACGCGCTTTGGTGTCTTCGCTGCCAATGT 157454 |||||||| ||| ||| ||| | | |||||| || | | ||||| | || | | Sbjct 199861 AATCGGGAATCCACAAACCGTAAAAAAGATCACGTGCCCTACTCTCTTCTTTACCGGTAT 199920 Query 157455 TTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACGGTTCAACGTACACTGCTT 157514 || | | |||| || | | || ||||||||||| | || | || Sbjct 199921 TTTTTTTTAGATCCAAAAAATCGAACACATCTGCGTGCCACGGTTCCAGATAGATGGCGA 199980 Query 157515 GGGCTCC---TTTTCGCTTGCCACCTTGATCCACGTGACGCACCATATTATTAAAAACTC 157571 ||||| | || |||||||| ||||| |||| ||| || | || ||| | |||| Sbjct 199981 TCGCTCCCGGTCTTTTGTTGCCACCCTGATCGACGTAACGTGCCGTGTTGTTATACACTC 200040 Query 157572 GCAGCATTGGTA 157583 | ||||| |||| Sbjct 200041 GTAGCATGGGTA 200052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504672677941440