Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq8286 143 4e-29 seq16628 134 2e-26 seq266908 129 9e-25 seq273682 102 1e-16 seq297272 98.7 1e-15 >seq8286 Length=1257 Score = 143 bits (158), Expect = 4e-29 Identities = 311/462 (67%), Gaps = 10/462 (2%) Strand=Plus/Minus Query 70059 GACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGT 70118 || |||| || ||||| || || || ||||||||||| ||| | || | || ||| | Sbjct 848 GAGAAGAAGGGGATCTTGGACCGGTCTACGGATTCCAATGGCGTCATTTTGGAGCCACCT 789 Query 70119 ATGTAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAA-TTGCAGACAATCATT 70177 || | ||| | ||||||||| | |||||||||||| || || | | || || Sbjct 788 ATAGAAACTCGCACACAGACTATGGAAACGAAGGTGTTGATCAAATTACA-AGACTCGTT 730 Query 70178 GACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCA 70237 || | |||| | |||| | || | | || || | || || |||||||| || Sbjct 729 GAAATCATCAAAAATGATCCCAACGACCGCCGAATGATATTATGTTCGTGGAATCCAACA 670 Query 70238 GATTTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGAT 70297 ||| | | |||||| |||||||| |||||||||||||| ||||| ||| ||||| Sbjct 669 GATATTAAGAAAATGGTCCTACCACCATGTCACTGTTTGGCACAGTTCTACGTAGACGAT 610 Query 70298 GGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTT 70357 | | | || || | |||||||| | |||||||||||| | |||||||| ||| Sbjct 609 GATGAGCTCTCGTGTCAACTGTATCAGCGTTCTGCCGACATGGGATTGGGTGTACCGTTT 550 Query 70358 AACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCG 70417 |||||||| || || || | | || |||||||| || | | || | |||| || Sbjct 549 AACATTGCGAGTTACGCTCTTCTCACACACATGATGGCAAAGGTGACTG----GAAAACG 494 Query 70418 CAC----GAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCC 70473 | || || || |||| | ||||| || ||| | || | || ||| | ||| | Sbjct 493 ACCTGGTGAATTTGTTCACAATTTAGGCGATGCCCACATTTACCTTAACCACGTGGAGTC 434 Query 70474 ATTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAA 70515 | ||| ||| | |||||||| ||| |||||||||| || Sbjct 433 CGTCAAGCAACAATTAGAACGGGAACCGCGACCTTTTCCGAA 392 >seq16628 Length=231947 Score = 134 bits (148), Expect = 2e-26 Identities = 309/462 (67%), Gaps = 10/462 (2%) Strand=Plus/Minus Query 70059 GACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGT 70118 || |||| || ||||| || || || |||||||| || ||| | || | || ||| | Sbjct 230994 GAGAAGAAGGGGATCTTGGACCGGTCTACGGATTTCAATGGCGTCATTTTGGAGCCACCT 230935 Query 70119 ATGTAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAA-TTGCAGACAATCATT 70177 || | ||| | ||||||||| | |||||||||||| || || | | || || Sbjct 230934 ATAGAAACTCGCACACAGACTATGGAAACGAAGGTGTTGATCAAATTACA-AGACTCGTT 230876 Query 70178 GACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCA 70237 || | |||| | |||| | || | | || || | || || |||||||| || Sbjct 230875 GAAATCATCAAAAATGATCCCAACGACCGCCGAATGATATTATGTTCGTGGAATCCAACA 230816 Query 70238 GATTTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGAT 70297 ||| | | |||||| |||||||| |||||||||||||| ||||| ||| ||||| Sbjct 230815 GATATTAAGAAAATGGTCCTACCACCATGTCACTGTTTGGCACAGTTCTACGTAGACGAT 230756 Query 70298 GGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTT 70357 | | | || || | |||||||| | |||||| ||||| | |||||||| ||| Sbjct 230755 GATGAGCTCTCGTGTCAATTGTATCAGCGTTCTGCCGATATGGGATTGGGTGTACCGTTT 230696 Query 70358 AACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCG 70417 |||||||| || || || | | || |||||||| || | | || | |||| || Sbjct 230695 AACATTGCGAGTTACGCTCTTCTCACACACATGATGGCAAAGGTGACTG----GAAAACG 230640 Query 70418 CAC----GAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCC 70473 | || || || |||| | ||||| || ||| | || | || ||| | ||| | Sbjct 230639 ACCTGGTGAATTTGTTCACAATTTAGGCGATGCCCACATTTACCTTAACCACGTGGAGTC 230580 Query 70474 ATTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAA 70515 | ||| ||| | |||||||| ||| |||||||||| || Sbjct 230579 CGTCAAGCAACAATTAGAACGGGAACCGCGACCTTTTCCGAA 230538 >seq266908 Length=1092028 Score = 129 bits (142), Expect = 9e-25 Identities = 209/300 (70%), Gaps = 8/300 (3%) Strand=Plus/Minus Query 70220 TGCTCATGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCT 70279 || || |||||||| ||||| | | |||||| ||||||||||||||||||||||| Sbjct 125609 TGTTCGTGGAATCCAACAGATATTAAGAAAATGGTCCTACCACCGTGTCACTGTTTGGCA 125550 Query 70280 CAGTTTTACTCGTACGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATG 70339 ||||| ||| |||||| | | || || | |||||||| | |||||||||| Sbjct 125549 CAGTTCTACGTAGACGATGATGAGCTCTCGTGTCAATTGTATCAGCGTTCTGCCGACATG 125490 Query 70340 GGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCAC 70399 || | |||||||| ||||||||||| || || || | | || |||||||| || | Sbjct 125489 GGATTGGGTGTACCGTTTAACATTGCGAGTTACGCTCTTCTCACACACATGATGGCAAAG 125430 Query 70400 ATTACCGGCCTGAAAGCGCAC----GAGTTCGTACACACCATTGGCGACGCTCACGTGTA 70455 | || | |||| || | || || || |||| | ||||| || ||| | || Sbjct 125429 GTGACTG----GAAAACGACCTGGTGAATTTGTTCACAATTTAGGCGATGCCCACATTTA 125374 Query 70456 TTTAAATCACATCGAGCCATTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAA 70515 | || ||||| ||| | | ||| ||| | |||||||| ||| |||||||||| || Sbjct 125373 CCTTAACCACATGGAGTCCGTCAAGCAACAATTAGAACGGGAACCGCGACCTTTTCCGAA 125314 >seq273682 Length=317161 Score = 102 bits (112), Expect = 1e-16 Identities = 151/215 (70%), Gaps = 12/215 (6%) Strand=Plus/Minus Query 127357 AGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTACGGCATGCTTTCGAAA 127416 || ||| | ||||| | ||| || ||||| || | ||||||||| ||||| ||||| Sbjct 199528 AGCTTGTCGTAGTCAATGAGCCCCGTCTGCGGGTTCACCTTGTAGGGCATCGACTCGAAG 199469 Query 127417 AAGAGTGATGTAGCGGACACGTTG--------CG----GAATCCGTGCGTCAGGTGGCCT 127464 |||| || || || || | || || ||| ||||| |||||||||||| Sbjct 199468 AAGATGGACGTGGCCGAGATCTTCTTCTTGTCCGTGAAGAAGCCGTGGGTCAGGTGGCCT 199409 Query 127465 CCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACGATTCCAGTGTACACG 127524 |||||||| || || || ||||| || | ||||| || | || | || |||||||| Sbjct 199408 CCGTCGGGAAGGTCAAGCCCCATTATCCGGCCGTGGGGCTCCACCACCCCCGTGTACACC 199349 Query 127525 GCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTAC 127559 |||||||||||| || || ||||| || || || Sbjct 199348 GCAAAGTTGGCCGGGGAACCAGAGTAGGGCTGCAC 199314 >seq297272 Length=244611 Score = 98.7 bits (108), Expect = 1e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 || || || || ||||| |||||||||||||| ||||| || || ||||||| ||| Sbjct 163450 GTCGCGTTTGCAGCCGTCGAGGGCATCTTCTTCTCGGGATCGTTCGCATCCATCTTCTGG 163509 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 || |||||||| |||||||||||||| || || ||| |||||| | || ||| ||| Sbjct 163510 CTGAAGAAGCGGGGACTCATGCCCGGCCTCACCTTCAGCAACGAGCTCATCAGTCGGGAC 163569 Query 125550 GAGG 125553 |||| Sbjct 163570 GAGG 163573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 737636506925920