Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq118272 114 9e-21 >seq118272 Length=246527 Score = 114 bits (126), Expect = 9e-21 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||||||||| ||||| || |||||||| || || | | |||| || | ||| Sbjct 50983 ATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGCGTGCGGCCGTCCTCGAGTTG 50924 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 |||||| ||| | || | ||| || ||||| |||||| || || ||||| || || Sbjct 50923 TTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCTTGGATCTT 50864 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| ||| || |||| |||||||| || || || || | ||| ||||| || || | Sbjct 50863 TGC-CTTGACGTTTTCGATGGTATCACTGGGCTCAACTTCGAGGGTGATGGTCTTGCCGG 50805 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||| |||||||| |||||||| Sbjct 50804 TCAGAGTCTTTACAAAGATTTGCAT 50780 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| ||||| || |||||||| || || | | |||| || | || Sbjct 51210 TGGAGGGTGGATTCTTTCTGGATGTTGTAGTCCGACAGGGTACGACCGTCCTCAAGCTGC 51151 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| || | || | ||| |||||||| ||||| ||||| ||||| || ||| Sbjct 51150 TTGCCGGCAAAGATGAGACGCTGTTGGTCCGGAGGAATCCCTTCCTTGTCCTGGATCTTG 51091 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || || |||| ||||| || || || || || | |||||||| || || ||| Sbjct 51090 GCTTTCACGTTTTCGATGGTGTCACTGGGCTCGACCTCGAGAGTAATGGTCTTGCCGGTC 51031 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 ||||||||||||||||||||||| Sbjct 51030 AGAGTTTTTACAAAAATTTGCAT 51008 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| || ||||| |||||||||||| || ||| | ||||| || || Sbjct 51438 TGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGACAGGGTTCGGCCATCTTCCAACTGC 51379 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | || | ||| || ||||| ||||| ||||| ||||| || || Sbjct 51378 TTTCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTTA 51319 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || ||||| ||||| || || || | ||| ||||| || || ||| Sbjct 51318 GCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTCCCCGTC 51259 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || || || |||||||| Sbjct 51258 AGGGTCTTCACGAAGATTTGCAT 51236 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| ||||| || |||||||| ||| || | | |||| || | ||| Sbjct 50070 TGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGTTGC 50011 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| ||| | |||| ||| || || || || ||||| || ||||| |||||| Sbjct 50010 TTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATTTTG 49951 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || |||| || || ||||| || || || | || || || || || || Sbjct 49950 GCCTTCACGTTTTCGATCGTGTCGCTCGGCTCAACCTCGAGCGTGATCGTCTTGCCAGTG 49891 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||| ||||| Sbjct 49890 AGGGTCTTGACAAAAATCTGCAT 49868 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| ||||| || || |||||||| || ||| | ||||| | || Sbjct 50298 TGAAGGGTGGACTCTTTCTGGATATTGTAATCCGACAGGGTTCGGCCATCTTCGAGCTGC 50239 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| || | |||| ||| || || ||| ||||| ||||| ||||| ||||||| Sbjct 50238 TTGCCGGCAAAGATCAGACGCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGAATTTTG 50179 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || || || ||||| || || || | || || || ||||| || Sbjct 50178 GCCTTCACGTTCTCGATTGTGTCGCTGGGCTCCACCTCCAGTGTGATTGTCTTACCGGTG 50119 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || ||||| || || || ||||| Sbjct 50118 AGGGTTTTGACGAAGATCTGCAT 50096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360548240511972