Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_004831.2 Length=43769 Score E Sequences producing significant alignments: (Bits) Value seq305778 95.1 3e-15 seq252761 95.1 3e-15 seq231572 95.1 3e-15 seq195851 95.1 3e-15 seq40492 95.1 3e-15 seq323919 93.3 1e-14 seq69393 86.0 2e-12 >seq305778 Length=2160 Score = 95.1 bits (104), Expect = 3e-15 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 39909 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 345 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 396 >seq252761 Length=1245 Score = 95.1 bits (104), Expect = 3e-15 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 39909 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 405 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 456 >seq231572 Length=86682 Score = 95.1 bits (104), Expect = 3e-15 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 39909 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 84975 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 84924 >seq195851 Length=1016 Score = 95.1 bits (104), Expect = 3e-15 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 39909 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 891 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 840 >seq40492 Length=309812 Score = 95.1 bits (104), Expect = 3e-15 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 39909 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 150399 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 150348 >seq323919 Length=1419 Score = 93.3 bits (102), Expect = 1e-14 Identities = 51/51 (100%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATAC 39908 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 542 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATAC 592 >seq69393 Length=1398 Score = 86.0 bits (94), Expect = 2e-12 Identities = 51/52 (98%), Gaps = 1/52 (2%) Strand=Plus/Minus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 39909 ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1357 CGTTAGA-CGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 1307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139325186323224