Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq118272 82.4 5e-11 >seq118272 Length=246527 Score = 82.4 bits (90), Expect = 5e-11 Identities = 151/220 (69%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 33154 CCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTG 33213 ||||| |||| || | || ||||| || || || ||||| || ||||| || || Sbjct 49855 CCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGTCC 49796 Query 33214 GTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT 33273 ||| || | ||||| || || || | |||||||||||| | || || || || || Sbjct 49795 GTCTTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGCGGGATCCCCTCCTT 49736 Query 33274 TTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGT 33330 || |||| ||| || || ||| |||||||||| | || | || || || || Sbjct 49735 GTCTTGAATCTTAGCC---TTCACGTTTTCAATCGTGTCGCTCGGCTCCACCTCGAGCGT 49679 Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || ||||| || || || ||||| ||||| || |||||| Sbjct 49678 GATGGTTTTCCCGGTCAGGGTTTTGACGAAGATCTGCATG 49639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 317342085891816