Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq336791 129 6e-25 >seq336791 Length=793321 Score = 129 bits (142), Expect = 6e-25 Identities = 182/256 (71%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997 ||||| || ||||| ||||||| || ||||||||| | |||| | ||| ||||||| Sbjct 439541 CCGTGTGTTAGATGTCCGCCGCTATCTAAGGACATACCAAGAATTGTATCGCCCGGCTGT 439600 Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057 | | || | || || ||||| ||||||||||| || ||||||||||| || ||||| Sbjct 439601 AATAAAGCAAGATATACAGCCTGATTTGCTTGTGAGCCTGAATGAGGTTGCACATTTGCA 439660 Query 7058 AAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCT 7117 | || || |||| |||| ||| | ||||| || || | || || || ||| || Sbjct 439661 TATTTACAGTTAAAGAGTTTTTTTACTCGCTCTATAGCTAAATTTTCAGCTTTATCTACT 439720 Query 7118 TTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAA 7177 | |||| ||| ||| | || || || | ||| || || ||||| || || || | | Sbjct 439721 TCCTCGCAACCGTTATAGAAACGCTTACCTGAATACCCTTCCGCATATTTATTAGTCAGA 439780 Query 7178 ATAGAACCCTGTGCTT 7193 ||||| ||||| |||| Sbjct 439781 ATAGACCCCTGAGCTT 439796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552798171756320