Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq8286 104 2e-17 seq266908 96.9 2e-15 seq16628 95.1 8e-15 >seq8286 Length=1257 Score = 104 bits (114), Expect = 2e-17 Identities = 139/192 (72%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 25431 TCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCT 25490 || ||||| | ||||| | ||| || || || | | |||| ||||| || || ||| | Sbjct 437 TCCACGTGGTTAAGGTAAATGTGGGCATCGCCTAAATTGTGAACAAATTCACCAGGTCGT 496 Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550 || || || | |||||||||| ||||| ||| ||| || || |||||||| ||| Sbjct 497 TTTCCAGTCACCTTTGCCATCATGTGTGTGAGAAGAGCGTAACTCGCAATGTTAAACGGT 556 Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCT 25610 || || || |||||||| | || | ||| || || |||||||||||||| || ||| Sbjct 557 ACACCCAATCCCATGTCGGCA-GAACGCTGATACAGTTGACACGAGAGCTCATCATCGTC 615 Query 25611 CACGTAAAACTG 25622 ||||| ||||| Sbjct 616 TACGTAGAACTG 627 >seq266908 Length=1092028 Score = 96.9 bits (106), Expect = 2e-15 Identities = 130/180 (72%), Gaps = 1/180 (1%) Strand=Plus/Plus Query 25443 AGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACG 25502 ||||| | ||| || || || | | |||| ||||| || || ||| | || || || Sbjct 125371 AGGTAAATGTGGGCATCGCCTAAATTGTGAACAAATTCACCAGGTCGTTTTCCAGTCACC 125430 Query 25503 TAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCC 25562 | |||||||||| ||||| ||| ||| || || |||||||| ||||| || || ||| Sbjct 125431 TTTGCCATCATGTGTGTGAGAAGAGCGTAACTCGCAATGTTAAACGGTACACCCAATCCC 125490 Query 25563 ATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTG 25622 ||||| | || | ||| || | |||||||||||||| || ||| ||||| ||||| Sbjct 125491 ATGTCGGCA-GAACGCTGATACAATTGACACGAGAGCTCATCATCGTCTACGTAGAACTG 125549 >seq16628 Length=231947 Score = 95.1 bits (104), Expect = 8e-15 Identities = 137/192 (71%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 25431 TCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCT 25490 || ||||| | ||||| | ||| || || || | | |||| ||||| || || ||| | Sbjct 230583 TCCACGTGGTTAAGGTAAATGTGGGCATCGCCTAAATTGTGAACAAATTCACCAGGTCGT 230642 Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550 || || || | |||||||||| ||||| ||| ||| || || |||||||| ||| Sbjct 230643 TTTCCAGTCACCTTTGCCATCATGTGTGTGAGAAGAGCGTAACTCGCAATGTTAAACGGT 230702 Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCT 25610 || || || ||||| || | || | ||| || | |||||||||||||| || ||| Sbjct 230703 ACACCCAATCCCATATCGGCA-GAACGCTGATACAATTGACACGAGAGCTCATCATCGTC 230761 Query 25611 CACGTAAAACTG 25622 ||||| ||||| Sbjct 230762 TACGTAGAACTG 230773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338605897886916