Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq16628 96.9 4e-15 >seq16628 Length=231947 Score = 96.9 bits (106), Expect = 4e-15 Identities = 371/569 (65%), Gaps = 18/569 (3%) Strand=Plus/Plus Query 6841 TAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCATATCAA-CAGCTTG 6899 ||||| || ||||| |||| | |||| ||||||||| ||| | || || ||| Sbjct 230598 TAAATGTGGGCATCGCCTAAATTGTGAACAAATTCACCAGGTCGTTTTCCAGTCACCTTT 230657 Query 6900 AGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCAT 6959 || || | | ||| | | || ||| || | ||||| |||||||| |||||||| Sbjct 230658 -GCCATCATGTGTGTGAGAAGAGCGTAACTCGCAATGTTAAACGGTACACCCAATCCCAT 230716 Query 6960 ATCTGCTGATCTTTGATAACATTGACAAGATA---AAATATTGTCTATAGCATAAAATTG 7016 ||| || || | ||||| ||||||| || | | || ||||| | || || || Sbjct 230717 ATCGGCAGAACGCTGATACAATTGACACGAGAGCTCATCATCGTCTA---CGTAGAACTG 230773 Query 7017 ACACAATACA-TGACATGGAGGTAAAACAGCCTGATCT--ATATCAGATGGATTCCAAGC 7073 ||| ||| |||||||| |||| || | | ||| ||||| | ||||||||| | Sbjct 230774 TGCCAA-ACAGTGACATGGTGGTAGGAC--CATTTTCTTAATATCTGTTGGATTCCACGA 230830 Query 7074 AGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAATTATTTGTAA 7133 | | || || || | || || ||| | ||||| || | | | |||||| Sbjct 230831 ACATAATATCATTCGGCGGTCGTTGGGA-TCATTTTTGATGATTTCAACGAGTCTTGTAA 230889 Query 7134 -TTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAAT 7192 |||||| | ||| | | |||| | || || | ||| |||| | |||||||||| Sbjct 230890 TTTGATCAACACCTTCGTTTCCATAGTCTGTGTGCGAGTTTCTATAGGTGGCTCCAAAAT 230949 Query 7193 GTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATGATTAAATCCTA 7252 | | ||||||||| || || | || || | ||| |||||||| |||| | ||| |||| Sbjct 230950 GACGCCATTGAAATCCGTAGACCGGTCCAAGATCCCCTTCTTCTCGATCAAAAAAACCTA 231009 Query 7253 ATCGATTTA-AATTAGATTTTGATCCATAAGCATCCCAAATATGTACAGAtttttttGAT 7311 | | || | || | || || || | ||||| || || | | || ||| Sbjct 231010 AGCTATCGAGAAATCGA-CGAGAACCGTTTTGGTCCCATATGTGAATACCACGTTCTGAC 231068 Query 7312 AAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAAAAGTTCTTCTACTATTCCACGC 7371 || | | | || |||||||| || ||||| | ||||||||| || | ||| ||| Sbjct 231069 AATTCTTTGGCATCGGTAGATCCGCGGAGAAACCAGAGAAGTTCTTCCACAACTCCTCGC 231128 Query 7372 CAAAACATTCTTTTTGTAGTGAATAAAGG 7400 ||||| | | ||| || || |||||||| Sbjct 231129 CAAAAAACGCGTTTGGTTGTTAATAAAGG 231157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593119875787200