Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq118272 113 4e-20 >seq118272 Length=246527 Score = 113 bits (124), Expect = 4e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || || | || ||||| ||||| || | ||||| || || || | ||| | Sbjct 50786 TTTGCATGCCACCACGCAGTCGCAGCACCAGATGGAGGGTAGACTCTTTCTGGATGTTGT 50727 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || || ||| ||| || ||||| || || ||||||| | | ||||||| Sbjct 50726 AGTCCGACAGGGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGAT 50667 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | |||||||||||||| ||||| | |||||| ||||| ||| ||| |||||| | Sbjct 50666 CGGGAGGAATACCTTCCTTGTCCTGAATTTTCGCCTTCACGTTCTCGATCGTGTCACTGG 50607 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || || || | ||||| || || || || ||||| || || ||||||||||||| Sbjct 50606 GCTCCACCTCCAGTGTGATAGTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCATGC 50550 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || || ||||| || | ||| || || || ||| | ||| || Sbjct 50532 ACCAAGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCG 50473 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || || ||| | ||||| || | |||||||| || || || ||||| ||||| | Sbjct 50472 AGTTGCTTGCCGGCGAAGATCAAACGCTGCTGATCCGGGGGGATCCCTTCCTTGTCCTGG 50413 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| || ||||| | | |||||| | | ||||| || | |||||||||||| Sbjct 50412 ATTTTGGCTTTGACATTTTCAATTGTGTCACTGGGCTCGACTTCCAGCGTGATGGTTTTG 50353 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || ||||| || ||||||||||||| Sbjct 50352 CCGGTGAGGGTTTTGACGAAGATCTGCATGC 50322 Score = 100 bits (110), Expect = 3e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || ||||| || ||| ||||||| | | |||||||| |||||||| ||||| || Sbjct 50251 ATCTTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGAGGAATGCCTTCCTT 50192 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | |||||| ||||| ||| ||| ||||| | | || || || | ||||| Sbjct 50191 GTCCTGAATTTTGGCCTTCACGTTCTCGATTGTGTCGCTGGGCTCCACCTCCAGTGTGAT 50132 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || ||||| || ||||||||||||| Sbjct 50131 TGTCTTACCGGTGAGGGTTTTGACGAAGATCTGCATGC 50094 Score = 91.5 bits (100), Expect = 1e-13 Identities = 167/242 (69%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || ||||| | || |||| |||| ||| | || || ||||| || | Sbjct 49879 AAAAATCTGCATGCCTCCGCGCAGCCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAAT 49820 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || ||| || ||| || || ||||| || ||| | ||||| | | ||| Sbjct 49819 GTTGTAGTCGGACAAGGTGCGTCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAGACGTTG 49760 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||| || || || || || || ||||| | ||| || ||||| ||| | | ||||| Sbjct 49759 CTGGTCGGGCGGGATCCCCTCCTTGTCTTGAATCTTAGCCTTCACGTTTTCAATCGTGTC 49700 Query 94948 AGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 || || || || || | |||||||||||| || || || ||||| || |||||||||| Sbjct 49699 -GCTCGGCTCCACCTCGAGCGTGATGGTTTTCCCGGTCAGGGTTTTGACGAAGATCTGCA 49641 Query 95007 TG 95008 || Sbjct 49640 TG 49639 Score = 91.5 bits (100), Expect = 1e-13 Identities = 169/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 94762 TTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTT 94821 |||| |||| ||| || || || | | ||||| ||| | || | || || || || Sbjct 51025 TTTTACAAAAATTTGCATGCCACCACGAAGTCGCAGCACAAGATGAAGGGTGGACTCTTT 50966 Query 94822 TTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAA 94881 || | ||| || || || ||| | ||||| || ||||| ||| | ||||| | Sbjct 50965 CTGGATGTTGTAGTCTGACAGCGTGCGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATGAG 50906 Query 94882 TCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGAC 94941 | ||||| || || ||||| || || ||||| | || |||||||||||| ||| Sbjct 50905 ACGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCTTGGATCTTTGCCTTGACGTTTTCGAT 50846 Query 94942 AGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGAT 95001 || ||| | | || || || | |||||||| || || || ||||| || |||||||| Sbjct 50845 GGTATCACTGGGCTCAACTTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTTACAAAGAT 50786 Query 95002 CTGCATGC 95009 ||||||| Sbjct 50785 TTGCATGC 50778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446220699849120