Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq202380 158 2e-34 seq273105 154 2e-33 seq19251 122 1e-23 seq65526 89.7 8e-14 >seq202380 Length=518935 Score = 158 bits (174), Expect = 2e-34 Identities = 182/245 (74%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| || ||||| |||||||| || ||||| ||||| || || Sbjct 373525 CGCCAAGCGTCATCGCAAGGTGCTCCGAGACAACATCCAGGGGATCACAAAGCCCGCCAT 373584 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||||| |||||||| ||||||||| |||| || || |||| || |||| Sbjct 373585 TCGTCGTCTGGCTCGCCGTGGTGGCGTCAAGCGTATCTCGGGTCTGATCTACGAGGAGAC 373644 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | || ||||||| ||| ||| |||| || || || ||| || || Sbjct 373645 CCGAGGCGTGCTCAAAGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 373704 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | || || |||||| ||||||| ||||||| || |||| | ||||| Sbjct 373705 ACACGCCAAGAGAAAAACGGTCACCGCCATGGACGTCGTCTACGCGCTGAAGAGACAAGG 373764 Query 16672 CCGTA 16676 |||| Sbjct 373765 ACGTA 373769 >seq273105 Length=1101 Score = 154 bits (170), Expect = 2e-33 Identities = 195/267 (73%), Gaps = 1/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| |||||| ||||||||||| || |||||||||| || ||| Sbjct 1038 GCCAAGCGCCATCGCAAGGTTCTTCGCGATAACATCCAGGGGATCACCAAGCT-GCAATC 980 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| || || || || ||||| |||||||| | || | | |||||||||||| Sbjct 979 CGTCGCCTAGCCCGCCGCGGTGGTGTCAAGCGCATTTCCGAGCTCATCTATGAAGAGACC 920 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | ||| ||||||| ||| ||| || | ||||| || ||| |||||| Sbjct 919 CGCGGAGTCCTCAAGGTCTTCCTGGAGAACGTCATTCGCGATGCCGTCAGCTACACCGAG 860 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| || || |||||||| | || || || | || | |||||| Sbjct 859 CACGCCAACAGGAAGACCGTGACGGCCATGGATGTGGTGTACGCGCTCAAGAGGCAAGGC 800 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | ||||||||||| ||||| Sbjct 799 CGTACCCTCTATGGTTTTGGTGGTTAA 773 >seq19251 Length=12309 Score = 122 bits (134), Expect = 1e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| |||||| || ||||||| || ||||||||||| || ||| Sbjct 373 GCCAAGCGCCATCGCAAGGTTCTTCGCCATTACATCCAGGGGATCACCAAGCCTGCAATC 432 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| || || || || ||||| |||||||| | || || | |||||||||||| Sbjct 433 CGTCGCCTAGCCCGCCGCGGTGGTGTCAAGCGCATTTCCGGCCTTATCTATGAAGAGACC 492 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | ||| ||||||| ||| ||| || | ||||| || ||| |||||| Sbjct 493 CGCGGCGTCCTCAAGGTCTTCCTGGAGAACGTCATTCGCGATGCCGTCACCTACACCGAG 552 Query 16613 CACGCTAAACGTAAGAC 16629 ||||| || | ||||| Sbjct 553 CACGCCAAGAGGAAGAC 569 >seq65526 Length=1084 Score = 89.7 bits (98), Expect = 8e-14 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| |||||| ||||||||||| || ||||||||||| || ||| Sbjct 520 GCCAAGCGCCATCGCAAGGTTCTTCGCGATAACATCCAGGGGATCACCAAGCCTGCAATC 579 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCG 16524 ||||| || || || || ||||| |||||||| Sbjct 580 CGTCGCCTAGCCCGCCGCGGTGGTGTCAAGCG 611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78737370877956