Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq16628 605 4e-168 >seq16628 Length=231947 Score = 605 bits (670), Expect = 4e-168 Identities = 1503/2269 (66%), Gaps = 28/2269 (1%) Strand=Plus/Plus Query 61986 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62045 ||||||| ||| ||||| |||| | || ||||| || |||| ||| |||||||| Sbjct 198615 TTGTCCACTGTAAATTGGATGGCATTTACAGCAGGTTTGGTTCGTAAATAATACATTCCA 198674 Query 62046 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62105 ||||| || || || |||| || ||||||||||||| || ||||| ||| | || Sbjct 198675 GTTTTCAGTCCAAGTTTCCAACCACAAAAATGCATACTTGTAAGTTTTCCATACGTTGGC 198734 Query 62106 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62165 | || || || ||||||| ||||||||||| || | ||| ||||| | ||||| | | Sbjct 198735 TGAGCGATGTGTATATTCAGTGATTGACTTTGGTCCACGAAAGCTCCGCGATCTGCCGAC 198794 Query 62166 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 62224 |||| | || |||| || | ||||||||| | ||| ||| ||| ||||| || Sbjct 198795 ATTTCCAAAATATTCTTCTGAGAAATTTCCCACACAGTGCGATACAACATTTTTAAT-TC 198853 Query 62225 TTCTGGAAGGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTC 62284 || || | || || |||| || ||| | || || | ||| || | | Sbjct 198854 TTTAGGTATATTCAGCTTTTGAACAGAACCATTGTTAGCAATCAGTTCATTTTTTAAGTT 198913 Query 62285 ATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAA 62344 || |||||||| || ||| || | | |||||| |||| |||| ||||| Sbjct 198914 GTCGTTCCATAAACCGAGACGCGTCAAATCTTTCAAGAGATGGTGATTTACTATCTGAAA 198973 Query 62345 TTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATT 62404 ||||||||| | ||| | |||||| || | ||| || || || ||||||| | ||| || Sbjct 198974 TTCTCCAGAAAGTACGCGCCGAGTATACACATTGCTAGTGTATGGTTCCATTGCCTCGTT 199033 Query 62405 ATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCT 62464 ||| || | ||| || ||||| ||||| || ||||| ||||| || | | |||||| | Sbjct 199034 ATTACCAAGAATCTGCGCAGTAGATGCTGTTGGCATTGGTGCTACGAGAAGACTATTGCG 199093 Query 62465 AAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTAC 62524 | || | || | ||| | ||||||| || ||||| ||| || | || ||| Sbjct 199094 GATTCCAAAGCTTTTAATTCTTTCTTTTAAAGCAGACCAATCCCACAGGTTTGAAGGTGT 199153 Query 62525 AACNNNNNNNNNNNNNNNTTGTAGAATACCGT----TACTGGCGTACGATCCTACATATG 62580 || || || || || | |||||| ||| | ||| | Sbjct 199154 TACATTCCACATATCGTACTGAAGGATTCCTTGTGATACTGGACTACCAGGGTAC----G 199209 Query 62581 TATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAA 62640 | ||||| || || ||| | || |||||||||||| | || || || || ||||| | Sbjct 199210 TCTCGTACGGACCAAACTTTTTAGACAGTTCACAACTCTCTTCCAAAGCTCCATAATATA 199269 Query 62641 TGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTA 62700 | ||||| ||||| |||||||| | || ||||| | || || ||| ||| Sbjct 199270 TTGTTTCAAAGATTTTCTTATTAATTTCACAAGCTTCGTCACAGTCGAAAGGAAGTCTTA 199329 Query 62701 AGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 62760 | | ||| || ||||| || || ||||| || || || || ||||| | ||| | | | | Sbjct 199330 ATAAAATGAAAGCGTCGGCCAAACCTTGGACTCCGATTCCAATAGGGCGATGCCGCATGT 199389 Query 62761 TAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 62820 | || | || ||||| ||||| ||||||||||||| ||| || |||||||| | |||| Sbjct 199390 TTGAAAGTTTCGCTTCGGGAATTGGATAATAATTAACATCGATTATTTTATTCAAGTTTC 199449 Query 62821 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATTACAA 62880 | | ||| | || | || ||| |||||| || | |||| || | Sbjct 199450 TAGTTACGACTCTAGTTACTTGACGCAATTTTTCAAAATCGAAGTGTCCATGATAAACGA 199509 Query 62881 ACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 62940 | ||||| |||| || || | |||||| ||||| ||||| | | | || || | Sbjct 199510 ATCGATTCAAAGCAATCGACGCTAAATTACACACGGCAACCTCGTCAACGGACGTGTACT 199569 Query 62941 GTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCT 63000 || || || || || ||||||||||| || || || || | |||| |||||| | Sbjct 199570 CTACGATTTCGGTACATAGATTACTACATTTTATTGTACCGACGTTTTTTTGATTCGATT 199629 Query 63001 TTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTA 63060 || | || || || || || || | || |||| ||||||||||| | || ||||| | Sbjct 199630 TTCTATTGCAGGCGTCTTTGTATAACATATATGGCGTACCAGTTTCCGTTTGTGATTCGA 199689 Query 63061 TAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTC--TTTC 63118 |||| || |||||| | | || | | || || | |||||| | || Sbjct 199690 TAATTGCACTCCAGAGTTGTTGTGCACGAACTT--GACGCCGATAACGTTTCTCCGTCTC 199747 Query 63119 GTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTC 63178 |||| | || | | |||||| || || || | |||| | || ||||| ||| Sbjct 199748 GTATCGAACGTAAAGTTTTTCGAAGTCTTCGCCGTATACATCTTGCAGGTGAGGACTTTC 199807 Query 63179 ATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGG 63238 | ||||||||||||||||| ||| || || | ||| | |||||| || | ||| || Sbjct 199808 GTGTGGACACATCAACGACCATATTCCATCTTCTTCCACCCTTTTCATGAATAAATCGGG 199867 Query 63239 AATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 63298 |||||| | | | ||| ||||| | | ||| || || || || ||||| ||||| Sbjct 199868 AATCCACAAACCGTAAAAAAGATCACGTGCCCTACTCTCTTCTTTACCGGTATTTTTTTT 199927 Query 63299 AAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCC 63358 ||||| | || | | | ||| | ||||||||||||| || ||||| || |||| Sbjct 199928 TAGATCCAAAAAATCGAACACATCTGCGTGCCACGGTTCCAGATAGATGGCGATCGCTCC 199987 Query 63359 AGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 63418 || | |||||| || |||||||| | ||| | || ||||| ||||| |||| | ||| Sbjct 199988 CGGTCTTTTGTTGCCACCCTGATCGACGTAACGTGCCGTGTTGTTATACACTCGTAGCAT 200047 Query 63419 TGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT 63478 || | ||||||||| ||| ||||||| || || | || || |||||| |||||||| Sbjct 200048 GGGTACAATACCGTTCGATGTACCATTTGTTCCTGCTATGTAACTTCCAGAAGCACGAAT 200107 Query 63479 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 63538 || || | |||||||| || ||| ||| || || | ||| || |||| | Sbjct 200108 GTTGTGTATGTTAATTCCTATTCCACCAGCCGATTTTGAAATGAGTGCACACTGTTTCAG 200167 Query 63539 CGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACAT 63598 || || || || || ||||||||||| || |||| | | || |||||| || |||| Sbjct 200168 TGTATCGTATATTCCTTCTATGCTATCGTCTTTCATTTGCAATAAAAAACAACTCGACAG 200227 Query 63599 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 63658 ||| | | ||| || || || || | || ||||| || ||||||||||||||||| Sbjct 200228 TTGCGGTTTAGGAGTCCCAGCGTTGAAAAGTGTGGGAGATGCTTGCGTAAACCATTTTTC 200287 Query 63659 AGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGC 63718 ||| | || |||||||| ||||| || | | ||| ||||| || | | Sbjct 200288 AGACATGAGGTTGTACGTTTCAATCGCACTGCTAAGATCGTCCCCGTGAATGCCAATCGA 200347 Query 63719 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTA 63778 || ||||| | |||||| || || | || || | || || || || | || | Sbjct 200348 AACGCGCATAAGCATGTGTTGTGGCCGCTCTACAACTTTCCCATTAATCTTGAGTAAATG 200407 Query 63779 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATA 63836 | |||||| || ||||| ||||| ||||| || ||||| || || ||||||| Sbjct 200408 CGCACGTTCCAATGTCTTAAATCCAAAGTAGTTATAATTGAAA--TCGCGATCGTAAACG 200465 Query 63837 ATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT--GAAA 63894 || |||||| | ||| || || |||| || | || || | ||| || Sbjct 200466 ATGGACGAGTTTAAAAAATCTGCATTATTCATAACGATCT-TAT-ATGTTTCTTCGCTAA 200523 Query 63895 TAATCGGAGAATGTTTCCCATT-TTTAGGATTAACATAGTTGA-ATAAATCCTCCATCAC 63952 | || || | | ||| || || || ||| |||| ||| ||||||| |||||| Sbjct 200524 TCATGGGCGTAGATTTTCCGTTAGTTTCATTTACCATA--TGATATAAATCAGTCATCAC 200581 Query 63953 TTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAG 64012 || ||||| | ||||| ||||| ||||||| ||| || | ||| | || || ||||| Sbjct 200582 CTCGCTAAAAACCTTTTTCGTTTCTTTGTGTAAATTAGAAATGGCGAGTCGCGCTGCTAG 200641 Query 64013 AATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTC 64072 ||||||||| || || |||| ||||| || || || |||| ||||| | | | || Sbjct 200642 AATGGCATAGTCTGGGTGTTTCGTAGTCATCGTTGCAGCAGTTTCTGCTGCTAAATTATC 200701 Query 64073 CAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAAT 64132 || ||| || || ||||| || ||||| ||| || | ||| | | || || | Sbjct 200702 CAGTTCCACTGTCGTTACGCCTGGATATAATCCGACGATCA-CTTTTTGGGTAATTACAC 200760 Query 64133 A-GGATCTATATGATCCGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTT 64191 | ||||||| ||| ||||| | |||||||| | ||| ||||| |||||||| |||| Sbjct 200761 AGGGATCTACGAAATCTGTGTTCAGCCCATAACAAAGTTTACTAATGCGAGACGTTATTT 200820 Query 64192 TATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGACAAACAT 64240 | || || || | |||| | |||||| || || | |||||||| Sbjct 200821 TGTCGAAGTGGATACTTTCGTGTCTTCCATTCCGCTTGACCACAAACAT 200869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620070024914720