Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_007022.1 Length=172963 Score E Sequences producing significant alignments: (Bits) Value seq336791 100 3e-16 >seq336791 Length=793321 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 6488 GCCTTTGCCGCGATAACATGCATTAACGGACCACCCTGAATACCCGGGAAGATAGCAGAA 6547 || ||||| ||||| | |||||||||||||||||| || | || || || | |||||| Sbjct 439115 GCTTTTGCAGCGATTATATGCATTAACGGACCACCTTGTAGTCCTGGAAATAATGCAGAA 439174 Query 6548 TTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGAATGAGACCACCACGAGGGCCGCGC 6607 |||| || ||| | || || ||||||||| | ||| | |||||| || || || | Sbjct 439175 TTTATCTTTTTGCCTATTTCTTCATCGTTAGATAAAATTAAACCACCTCGCGGTCCTCTA 439234 Query 6608 AAAGTTTTATGAGTTGTAGAAGTAACAA 6635 | ||||| ||||| ||||| ||||||| Sbjct 439235 AGTGTTTTGTGAGTGGTAGAGGTAACAA 439262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 550797853395360