Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq16628 172 1e-37 seq8286 141 2e-28 seq128081 140 8e-28 seq247634 86.0 2e-11 >seq16628 Length=231947 Score = 172 bits (190), Expect = 1e-37 Identities = 859/1340 (64%), Gaps = 40/1340 (3%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 || ||||| || | || ||| | | ||| ||||| |||| ||| || || |||| | Sbjct 200278 TTTACGCAAGCATCTCCCACACTTTTCAACGCTGGGACTCCTAAACCGCAACTGTCGAGT 200219 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || ||| | | ||||||| |||||| ||| || || || | || ||||| || | Sbjct 200218 TGTTTTTTATTGCAAATGAAAGACGATAGCATAGAAGGAATATACGATACACTGAAACAG 200159 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 ||||| || ||||| || || || ||||| || | || ||||| ||||||| Sbjct 200158 TGTGCACTCATTTCAAAATCGGCTGGTGGAATAGGAATTAACATACACAACATTCGTGCT 200099 Query 363727 -CAGAACAGTTACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTTC 363784 | | | |||||||| || ||| || ||| ||||| || | || |||||||| | Sbjct 200098 TCTGGA-AGTTACATAGCAGGAACAAATGG-TACATCGAACGGTATTGTACCCATGCTAC 200041 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGG--AGGAAAGCGCAAAGGGGC 363842 | |||| | |||| || || | |||||||| |||||||| | |||| | || || Sbjct 200040 GAGTGTATAACAACACGGCACGTTACGTCGATCAGGGTGGCAACAAAAGACCG--GGAGC 199983 Query 363843 GTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA 363902 | | || || ||||| || || || || ||| | || || ||| | || || || Sbjct 199982 GATCGCCATCTATCTGGAACCGTGGCACGCAGATGTGTTCGATTTTTTGGATCTAAAAAA 199923 Query 363903 AAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGA 363962 ||| || || ||||| || | ||||||||||| || || | | ||| || | || Sbjct 199922 AAATACCGGTAAAGAAGAGAGTAGGGCACGTGATCTTTTTTACGGTTTGTGGATTCCCGA 199863 Query 363963 CCATTTTATGAAGCGCGTGGAGGCAGGTAAGAAT-TGGTCACTCTTTTGCCCACACGAAT 364021 || ||||| | ||||| | || | |||| ||||| | | || ||||||||| Sbjct 199862 TTTATTCATGAAAAGGGTGGAAGAAGAT-GGAATATGGTCGTTGATGTGTCCACACGAAA 199804 Query 364022 GTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAAT 364081 |||| || ||||||| || || |||| | || |||| || || Sbjct 199803 GTCCTCACCTGCAAGATGTATACGGCGAAGACTTCGAAAAACTTTACGTTCGATACGAGA 199744 Query 364082 CGGAGGGAAAGG--CTCGTAAGACAA-TTCCCGCACAGAAGCTATGGTTTGCCATCATGG 364138 |||| |||| | ||| | ||| ||| ||||| | || ||| ||| || || | Sbjct 199743 CGGA--GAAACGTTATCG-GCGTCAAGTTCGTGCACAACAACTCTGGAGTGCAATTATCG 199687 Query 364139 ATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGT 364198 | || || | || || || || || |||||||| |||||||| | ||||| | || | Sbjct 199686 AATCACAAACGGAAACTGGTACGCCATATATGTTATACAAAGACGCCTGCAATAGAAAAT 199627 Query 364199 CCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAAT 364258 | || || | || | |||||||| | || || ||||||||||| || | || | Sbjct 199626 CGAATCAAAAAAACGTCGGTACAATAAAATGTAGTAATCTATGTACCGAAATCGTAGAGT 199567 Query 364259 ACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGC---GCTTC-CGGCG 364314 |||| | |||||| |||||| ||||| | |||||||| || | || || Sbjct 199566 ACACGTCCGTTGACGAGGTTGCCGTGTGTAATTTAGCGTCGATTGCTTTGAATCGATTCG 199507 Query 364315 TTTGTAAAAGATGGTAC--TTTTGACCACCAGCATCTTTATGACGTAACCTATCAT-GCT 364371 ||| | | || | | |||||| | || || | |||| ||| | | Sbjct 199506 TTTATCATGGACACTTCGATTTTGAAAAATTGCGTC------AAGTAA-CTAGAGTCGTA 199454 Query 364372 ACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGT 364431 ||| | || | | || | ||||| ||||||||||||||||| ||||| | | | Sbjct 199453 ACTAGAAACTTGAATAAAATAATCGATGTTAATTATTATCCAATTCCCGAAGCGAAACTT 199394 Query 364432 TCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATG 364491 || || ||||| |||||||| ||||| | || || || || | || |||| ||| || Sbjct 199393 TCAAACATGCGGCATCGCCCTATTGGAATCGGAGTCCAAGGTTTGGCCGACGCTTTCAT- 199335 Query 364492 ATGCTCAAGA-TGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGA 364550 | | |||| | | || || | || ||| ||| | |||||| | |||||||| Sbjct 199334 TTTATTAAGACTTCCTTTCGACTGTGACGAAGCTTGTGAAATTAATAAGAAAATCTTTGA 199275 Query 364551 AACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTA 364610 |||||| |||| || || || | ||||| || | |||| || ||| Sbjct 199274 AACAATATATTATGGAGCTTTGGAAGAGAGTTGTGAACTGTCTAAAAAGTTTGGTCCGTA 199215 Query 364611 CTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGT 364670 | || || || || | || || |||| | |||| ||| | |||||||| Sbjct 199214 CGAGACGTACCCTGGTAGTCCAGTATCACAAGGAATCCTTCAGTACGATATGTGGAATGT 199155 Query 364671 CACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGC-ATGGTA 364729 || || || || ||| | ||| | | || | |||| |||| ||| | Sbjct 199154 AACACCTTCAAACCTGTGGGATTGGTCTGCTTTAAAAGAAAGAATTAA-AAGCTTTGGAA 199096 Query 364730 CTCGCA--ACTC-CCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCG 364786 |||| | || ||||| ||| || ||||| || || |||||||| ||||| || | Sbjct 199095 TCCGCAATAGTCTTCTCGT---AGCACCAATGCCAACAGCATCTACTGCGCAGATTCTTG 199039 Query 364787 GAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCG 364846 | || |||||| | ||||| | || |||||| | ||| | || || || ||||| | Sbjct 199038 GTAATAACGAGGCAATGGAACCATACACTAGCAATGTGTATACTCGGCGCGTACTTTCTG 198979 Query 364847 GAGAATTTCCGGTAGTTAAT 364866 ||||||||| | |||| ||| Sbjct 198978 GAGAATTTCAGATAGTAAAT 198959 Score = 150 bits (166), Expect = 5e-31 Identities = 367/545 (67%), Gaps = 16/545 (3%) Strand=Plus/Minus Query 111351 GGAATTGTCGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCA 111410 ||| |||| ||||||||||| |||||| | |||||| ||| |||| || ||| | || Sbjct 231124 GGAGTTGTGGAAGAACTTCTCTGGTTTCTCCGCGGATCTACCGATGCCAAAGAATTGTCA 231065 Query 111411 GCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGT 111470 | | | | | || ||||| ||| || || ||| ||||| ||| | ||| Sbjct 231064 GAACGTGGTATTCACATATGGGACCAAAACGGTTCTCGTCGATTTCTCGATAGCTTAGGT 231005 Query 111471 CTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTT 111530 || | || |||||||| ||||| ||||| || ||||||||||||||||| || ||| Sbjct 231004 TTTTTTGATCGAGAAGAAGGGGATCTTGGACCGGTCTACGGATTTCAATGGCGTCATTTT 230945 Query 111531 GGTGCAGACTACAAAACCATGCACGACTCA-TATGATTCACAGGGAACTGATCAA-TTAC 111588 || || ||| | || | |||| || | |||| | || ||||||| |||| Sbjct 230944 GGAGCCACCTATAGAAACTCGCAC-ACAGACTATGGAAACGAAGGTGTTGATCAAATTAC 230886 Query 111589 AGAATGTCATTGATCAAATTAAGAACAA-CCCAACTTCTCGTCGCAT--TATTATGAGTG 111645 | | || |||| || || || | |||||| | || || || ||||||| | Sbjct 230885 AAGAC-TCGTTGAAATCATCAAAAATGATCCCAACGAC-CGCCGAATGATATTATG--TT 230830 Query 111646 CATGGAACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGT 111705 | ||||| |||| | | | ||||||| || ||||||||||| | || |||| Sbjct 230829 CGTGGAATCCAACAGATATTAAGAAAATGGTCCTACCACCATGTCACTGTTTGGCACAGT 230770 Query 111706 TTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTC 111765 | || ||| |||| | ||| || || ||| |||||||||| ||||| ||||| || Sbjct 230769 TCTACGTAGACGATGATGAGCTCTCGTGTCAATTGTATCAGCGTTCTGCCGATATGGGAT 230710 Query 111766 TTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTA 111825 | ||||| |||||||| ||||| |||||||| || || || | | || || | | | Sbjct 230709 TGGGTGTACCGTTTAACATTGCGAGTTACGCTCTTCTCACACACATGATGGCAAAGGTGA 230650 Query 111826 C---AAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAA 111882 | ||| | ||| |||||||| ||||| | | || ||||| || ||||| | Sbjct 230649 CTGGAAAAC---GACCTGGTGAATTTGTTCACAATTTAGGCGATGCCCACATTTACCTTA 230593 Query 111883 ACCAC 111887 ||||| Sbjct 230592 ACCAC 230588 >seq8286 Length=1257 Score = 141 bits (156), Expect = 2e-28 Identities = 365/545 (67%), Gaps = 16/545 (3%) Strand=Plus/Minus Query 111351 GGAATTGTCGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCA 111410 ||| |||| ||||||||||| |||||| | |||||| ||| |||| || ||| | || Sbjct 978 GGAGTTGTGGAAGAACTTCTCTGGTTTCTCCGCGGATCTACCGATGCCAAAGAATTGTCA 919 Query 111411 GCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGT 111470 | | | | | || ||||| ||| || || ||| ||||| ||| | ||| Sbjct 918 GAACGTGGTATTCACATATGGGACCAAAACGGTTCTCGTCGATTTCTCGATAGCTTAGGT 859 Query 111471 CTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTT 111530 || | || |||||||| ||||| ||||| || |||||||| |||||||| || ||| Sbjct 858 TTTTTTGATCGAGAAGAAGGGGATCTTGGACCGGTCTACGGATTCCAATGGCGTCATTTT 799 Query 111531 GGTGCAGACTACAAAACCATGCACGACTCA-TATGATTCACAGGGAACTGATCAA-TTAC 111588 || || ||| | || | |||| || | |||| | || ||||||| |||| Sbjct 798 GGAGCCACCTATAGAAACTCGCAC-ACAGACTATGGAAACGAAGGTGTTGATCAAATTAC 740 Query 111589 AGAATGTCATTGATCAAATTAAGAACAA-CCCAACTTCTCGTCGCAT--TATTATGAGTG 111645 | | || |||| || || || | |||||| | || || || ||||||| | Sbjct 739 AAGAC-TCGTTGAAATCATCAAAAATGATCCCAACGAC-CGCCGAATGATATTATG--TT 684 Query 111646 CATGGAACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGT 111705 | ||||| |||| | | | ||||||| || ||||||||||| | || |||| Sbjct 683 CGTGGAATCCAACAGATATTAAGAAAATGGTCCTACCACCATGTCACTGTTTGGCACAGT 624 Query 111706 TTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTC 111765 | || ||| |||| | ||| || || ||| |||||||||| ||||| || || || Sbjct 623 TCTACGTAGACGATGATGAGCTCTCGTGTCAACTGTATCAGCGTTCTGCCGACATGGGAT 564 Query 111766 TTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTA 111825 | ||||| |||||||| ||||| |||||||| || || || | | || || | | | Sbjct 563 TGGGTGTACCGTTTAACATTGCGAGTTACGCTCTTCTCACACACATGATGGCAAAGGTGA 504 Query 111826 C---AAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAA 111882 | ||| | ||| |||||||| ||||| | | || ||||| || ||||| | Sbjct 503 CTGGAAAAC---GACCTGGTGAATTTGTTCACAATTTAGGCGATGCCCACATTTACCTTA 447 Query 111883 ACCAC 111887 ||||| Sbjct 446 ACCAC 442 >seq128081 Length=1306280 Score = 140 bits (154), Expect = 8e-28 Identities = 130/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| |||||| |||| |||||||| ||||| || || || || ||| Sbjct 764101 GCGCAGCAGCTGTGGTACGCCATCCTGGAGTCGCAGATAGAGACGGGCACCCCTTACATG 764160 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 |||||||||| | |||||| |||||||||||||| || |||| || || || || Sbjct 764161 CTGTACAAAGACGCCTGCAACAGCAAGTCCAACCAGAAGAACCTCGGCACCATCAAGTGC 764220 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAG 364275 |||||||| || |||||| | ||||| |||||||| || |||||| Sbjct 764221 AGCAACCTGTGCACCGAGGTCATTGAGTACACCGCGCCAGACGAG 764265 >seq247634 Length=1103 Score = 86.0 bits (94), Expect = 2e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 111351 GGAATTGTCGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCA 111410 ||| |||| ||||||||||| |||||| | |||||| ||| |||| || ||| | || Sbjct 824 GGAGTTGTGGAAGAACTTCTCTGGTTTCTCCGCGGATCTACCGATGCCAAAGAATTGTCA 883 Query 111411 GCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGT 111470 | | | | | || ||||| ||| || || ||| ||||| ||| | ||| Sbjct 884 GAACGTGGTATTCACATATGGGACCAAAACGGTTCTCGTCGATTTCTCGATAGCTTAGGT 943 Query 111471 CTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTT 111530 || | || |||||||| ||||| ||||| || |||||||| |||||||| || ||| Sbjct 944 TTTTTTGATCGAGAAGAAGGGGATCTTGGACCGGTCTACGGATTCCAATGGCGTCATTTT 1003 Query 111531 GGTGC 111535 || || Sbjct 1004 GGAGC 1008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1297183372542744