Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq118272 100 2e-16 >seq118272 Length=246527 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || || | || || | || || ||| ||| | Sbjct 50096 ATGCAGATCTTCGTCAAAACCCTCACCGGTAAGACAATCACACTGGAGGTGGAGCCCAGC 50155 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||||| | || || || ||| ||||| |||||||| ||||||||||| Sbjct 50156 GACACAATCGAGAACGTGAAGGCCAAAATTCAGGACAAGGAAGGCATTCCTCCCGATCAG 50215 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | | ||||||||| |||||||||| | ||| | | ||||| || Sbjct 50216 CAGCGTCTGATCTTTGCCGGCAAGCAGCTCGAAGATGGCCGAACCCTGTCGGATTACAAT 50275 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || ||||| || || |||| Sbjct 50276 ATCCAGAAAGAGTCCACCCTTCA 50298 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||||||||| | || || || | ||||| |||| |||||| ||| Sbjct 51008 ATGCAAATTTTTGTAAAAACTCTGACCGGCAAGACCATTACTCTCGAGGTCGAGCCCAGT 51067 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| ||||| ||||| ||||| || ||||| || ||| Sbjct 51068 GACACCATCGAAAACGTGAAAGCCAAGATCCAGGACAAGGAAGGGATTCCTCCGGACCAA 51127 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | | ||||||||| || || || | | | | | || || ||| Sbjct 51128 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGTACCCTGTCGGACTACAAC 51187 Query 24171 ATTCAAAAAGAATCTAC 24187 || || |||||||| || Sbjct 51188 ATCCAGAAAGAATCCAC 51204 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || || || | || || || | || ||| | || |||||| ||| Sbjct 51235 AATGCAAATCTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTCGAGCCCAG 51294 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||||| | ||||| ||||| ||||| |||||||| || || || || Sbjct 51295 CGACACCATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCGGACCA 51354 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | | || ||||| | ||||||| | ||| | | |||||| || Sbjct 51355 GCAGCGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGAACCCTGTCCGATTACAA 51414 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| ||||| || || || Sbjct 51415 CATCCAAAAGGAGTCCAC 51432 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || |||| || |||| || ||| | | | Sbjct 49868 ATGCAGATTTTTGTCAAGACCCTCACTGGCAAGACGATCACGCTCGAGGTTGAGCCGAGC 49927 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || || || || ||||| || || || || || ||||| Sbjct 49928 GACACGATCGAAAACGTGAAGGCCAAAATCCAGGACAAGGAGGGAATCCCCCCGGATCAG 49987 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || ||||||||||||||| || | | | | | || ||| || ||| Sbjct 49988 CAGCGTCTGATCTTCGCCGGCAAGCAACTCGAGGACGGCCGTACCCTCTCCGACTACAAC 50047 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || ||||| || || |||| Sbjct 50048 ATCCAGAAAGAGTCCACCCTTCA 50070 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || ||| | || || | ||||||||| ||| Sbjct 50324 ATGCAGATCTTCGTCAAAACCCTCACCGGCAAAACCATCACGCTGGAAGTCGAGCCCAGT 50383 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | |||||| || || ||||| ||||| || || || ||||| Sbjct 50384 GACACAATTGAAAATGTCAAAGCCAAAATCCAGGACAAGGAAGGGATCCCCCCGGATCAG 50443 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||| | |||| | || |||||||||||||||||||| Sbjct 50444 CAGCGTTTGATCTTCGCCGGCAAGCAACTCGAAGATG 50480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427999919191260