Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq118272 143 3e-29 seq368444 113 4e-20 seq16628 109 5e-19 seq297272 82.4 7e-11 >seq118272 Length=246527 Score = 143 bits (158), Expect = 3e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||| | || || || || |||| ||| |||||||| || |||||||| || Sbjct 50551 GCCACCGCGGAGCCGGAGAACCAAGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 50492 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || || |||||||| ||| |||| ||||||||||| ||||| || Sbjct 50491 CAGGGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAACGCTGCTGATCCGGGGG 50432 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| |||||| |||| | || | || || ||| ||||| Sbjct 50431 GATCCCTTCCTTGTCCTGGATTTTGGCTTTGACATTTTCAATTGTGTCACTGGGCTCGAC 50372 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | |||||| ||||| || ||||| ||||| ||||||||| Sbjct 50371 TTCCAGCGTGATGGTTTTGCCGGTGAGGGTTTTGACGAAGATCTGCATG 50323 Score = 140 bits (154), Expect = 3e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| ||||| || | || | ||| |||||||| ||||||||||| ||| Sbjct 49867 GCCTCCGCGCAGCCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGA 49808 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||| || ||||||||||| ||| |||| | ||| |||||||| || || Sbjct 49807 CAAGGTGCGTCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGCGG 49748 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| || || ||| | | || | || ||| | | ||| | Sbjct 49747 GATCCCCTCCTTGTCTTGAATCTTAGCCTTCACGTTTTCAATCGTGTCGCTCGGCTCCAC 49688 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 |||| || | |||||| ||||| || ||||| ||||| |||||||||||| Sbjct 49687 CTCGAGCGTGATGGTTTTCCCGGTCAGGGTTTTGACGAAGATCTGCATGACT 49636 Score = 129 bits (142), Expect = 6e-25 Identities = 174/240 (73%), Gaps = 3/240 (1%) Strand=Plus/Minus Query 130995 CTTTCACCATGAGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAAT 131054 ||||||| || |||||| || | |||||| || | || | ||| ||||||||||| || Sbjct 51472 CTTTCAC--TG-GCCACCACGGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTTTGGAT 51416 Query 131055 GTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTG 131114 |||||||||| || ||| || || || | |||||| || || |||| | |||||| Sbjct 51415 GTTGTAATCGGACAGGGTTCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGCTG 51356 Query 131115 CTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATC 131174 ||||||||| || || ||||| ||||| ||| || ||||| | ||| | || || Sbjct 51355 CTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTC 51296 Query 131175 GGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | ||| ||||| || | ||| | ||| || || || || || || ||||| || ||||| Sbjct 51295 GCTGGGCTCGACCTCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATTTGCAT 51236 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||||| || | || | ||| || || || || |||||||| || | Sbjct 51234 CCACCGCGGAGCCGCAGAACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCCGAC 51175 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| ||||||||||| || |||| | |||||| ||||||||||| Sbjct 51174 AGGGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGAGGA 51115 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || || | | || | || || ||| ||||| Sbjct 51114 ATCCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTTTCGATGGTGTCACTGGGCTCGACC 51055 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| |||| ||| || ||||| ||||||||||| ||||| |||||| Sbjct 51054 TCGAGAGTAATGGTCTTGCCGGTCAGAGTTTTTACAAAAATTTGCATG 51007 Score = 125 bits (138), Expect = 7e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||| || | || | ||| ||||| || || |||||||| ||| Sbjct 50095 GCCACCGCGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGA 50036 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || |||||| || |||||||| ||| |||| | ||||||||| ||||| || Sbjct 50035 GAGGGTACGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGG 49976 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||| || ||||| |||||| ||| | | || | || ||| | | ||| | Sbjct 49975 GATTCCCTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCGATCGTGTCGCTCGGCTCAAC 49916 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 |||| || | || || || || || || || || |||||||||||| || Sbjct 49915 CTCGAGCGTGATCGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCATGCCT 49864 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||| || | || | ||| ||||| || || || |||||||| Sbjct 50323 GCCACCGCGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATATTGTAATCCGA 50264 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| || || || ||||||||||| || |||| | ||||||||| || ||||| Sbjct 50263 CAGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGAGG 50204 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||||| ||| | | ||| | || ||| ||| ||| | Sbjct 50203 AATGCCTTCCTTGTCCTGAATTTTGGCCTTCACGTTCTCGATTGTGTCGCTGGGCTCCAC 50144 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | || |||||||| || ||||| ||||| ||||||||| Sbjct 50143 CTCCAGTGTGATTGTCTTACCGGTGAGGGTTTTGACGAAGATCTGCATG 50095 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| |||||||| | ||| | ||| ||||| || || |||||||| || Sbjct 50779 GCCACCACGCAGTCGCAGCACCAGATGGAGGGTAGACTCTTTCTGGATGTTGTAGTCCGA 50720 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || ||||||||||| || |||| | ||||||||| || ||||| Sbjct 50719 CAGGGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCGGGAGG 50660 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| |||||| ||| | | ||| | || || ||| ||| | Sbjct 50659 AATACCTTCCTTGTCCTGAATTTTCGCCTTCACGTTCTCGATCGTGTCACTGGGCTCCAC 50600 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | || || ||||| ||||| || ||||| ||||||||| Sbjct 50599 CTCCAGTGTGATAGTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCATG 50551 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | |||||||| | ||| | ||| ||||| || || |||||||| || Sbjct 51007 GCCACCACGAAGTCGCAGCACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 50948 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| || || ||||| ||| |||| | |||||||||||| || || Sbjct 50947 CAGCGTGCGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGTGG 50888 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| || ||||| | || | ||||| ||| ||| | Sbjct 50887 AATGCCCTCCTTGTCTTGGATCTTTGCCTTGACGTTTTCGATGGTATCACTGGGCTCAAC 50828 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || ||||| ||||| ||||| || || |||||| Sbjct 50827 TTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTTACAAAGATTTGCATG 50779 >seq368444 Length=413118 Score = 113 bits (124), Expect = 4e-20 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 131004 TGAGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC 131063 || ||| || ||||| |||||||| | |||| |||||||||||| || |||||||| || Sbjct 77695 TGCGCCGCCACGCAAGCGCAGCACCAGGTGTAGGGTCGACTCCTTCTGGATGTTGTAGTC 77754 Query 131064 GCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGG 131123 || ||||||| ||||| ||||||||||| || |||| | |||||||||||| || Sbjct 77755 CGACAGGGTGCGCCCATCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCAGG 77814 Query 131124 AGGGATTCCT 131133 ||||| ||| Sbjct 77815 GGGGATGCCT 77824 >seq16628 Length=231947 Score = 109 bits (120), Expect = 5e-19 Identities = 416/649 (64%), Gaps = 13/649 (2%) Strand=Plus/Plus Query 145508 ATAGGATATCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATG 145567 || ||||| |||| ||||| |||||||||||||||| ||| || | || | Sbjct 199410 ATTGGATAATAATTAACATCGATTATTTTATTCAAGTTTCTAGTTACGACTCTAGTTACT 199469 Query 145568 TGCCGCAACTTTTCAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCG 145627 || ||||| |||||||| || || | | | | ||||| | | ||| | || Sbjct 199470 TGACGCAATTTTTCAAAATCGAAGTGTCCATGATAAACGA------ATCGATTCAAAGCA 199523 Query 145628 ATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCG 145687 |||||||| |||||||| || || ||| || || |||| | |||||| |||| Sbjct 199524 ATCGACGCTAAATTACACACGGCAACCTCGTCAACGGACGTGTACTCTACGATTTCGGTA 199583 Query 145688 CACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCG 145747 || | ||| |||||||| || || || | |||| ||||| ||| || ||||| ||| Sbjct 199584 CATAGATTACTACATTTTATTGTACCGACGTTTTTTTGATTCGATTTTCTATTGCAGGCG 199643 Query 145748 TCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGC 145807 || ||||| | ||| || || ||||| ||| || | || | || || | | Sbjct 199644 TCTTTGTATAACATATATGGCGTACCAGTTTCCGTTTGTGATTCGATAATTGCAC--TCC 199701 Query 145808 A-AG-TCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGA 145865 | || | || ||||| || || || | || || ||| |||||| ||| | Sbjct 199702 AGAGTTGTTGTGCACGAACTTGACGCCGATAACGTTTCTCCGTCTCGTATCGAACGTAAA 199761 Query 145866 GCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCA 145925 | | || || | ||||| ||| |||| |||| | || |||||||||| Sbjct 199762 GTTTTTCGAAGTCTTCGCCGTATACATCTTGCAGGTGAGGACTTTCGTGTGGACACATCA 199821 Query 145926 GCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGT 145985 |||||||| || | | | || | | ||| || ||||| || | ||||| ||| Sbjct 199822 ACGACCATATTCCATCTTCTTCCACCCTTTTCATGAATAAATCGGGAATCCACAAACCGT 199881 Query 145986 ACATCAAGTCGCGCGCTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACAC 146045 | | | || || || | | || || ||| | ||| || | || | | | Sbjct 199882 AAAAAAGATCACGTGCCCTACTCTCTTCTTTACCGGTATTTTTTTTTAGATCCAAAAAAT 199941 Query 146046 TATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCC---TTTTCGTTTGC 146102 | | || |||||||||||||| | ||||| ||||| ||||| | || |||| Sbjct 199942 CGAACACATCTGCGTGCCACGGTTCCAGATAGATGGCGATCGCTCCCGGTCTTTTGTTGC 200001 Query 146103 CACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGG 146151 ||||||| || |||| |||| || |||||||| | || || | |||||| Sbjct 200002 CACCCTGATCGACGTAACGTGCCGTGTTGTTATACACTCGTAGCATGGG 200050 >seq297272 Length=244611 Score = 82.4 bits (90), Expect = 7e-11 Identities = 125/178 (70%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 46108 GACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGTATGGTGGCC 46167 |||||||| | || ||||||| || | ||| ||| || || | |||||| || || || Sbjct 163396 GACTGGGCACTAAACTGGATCAGCAACCGCAGCGCCACATTTGGCGAGCGCATCGTCGCG 163455 Query 46168 TTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTTACATCAAA 46227 ||||| || |||||| |||| || || || || || ||||||| | | || Sbjct 163456 TTTGCAGCCGTCGAGGGCATCTTCTTCTCGGGATCGTTCGCATCCATCTTCTGGCTGAAG 163515 Query 46228 ACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGG 46285 | ||| ||||||||||||| || || ||||||||||| || || ||||||| Sbjct 163516 AAGCGGGGACTCATGCCCGGCCTCACCTTCAGCAACGAGCTCATCAGTCGGGACGAGG 163573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 469832738081280