Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq17663 147 1e-30 seq277972 140 2e-28 seq203853 140 2e-28 seq56264 140 2e-28 seq14242 140 2e-28 seq339008 127 1e-24 seq234975 127 1e-24 seq118272 114 9e-21 seq11998 113 3e-20 seq88502 107 1e-18 seq363558 104 2e-17 seq223904 102 5e-17 seq136126 98.7 7e-16 seq112571 86.0 4e-12 seq254760 84.2 1e-11 seq77693 84.2 1e-11 seq340219 82.4 5e-11 seq317276 82.4 5e-11 seq247137 82.4 5e-11 >seq17663 Length=183429 Score = 147 bits (162), Expect = 1e-30 Identities = 261/378 (69%), Gaps = 16/378 (4%) Strand=Plus/Plus Query 6235 AGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTA 6294 |||| ||||| ||||| ||||| || || || || | || |||||| || || || | Sbjct 79625 AGGTGGAGGGCAAGGGCAACGGCATCAAGACGGTGCTGGTAAACATGGGGGAGGTGGCCA 79684 Query 6295 AGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTC 6354 |||| || || || |||||||||||||| || || ||||| ||||| || || || | Sbjct 79685 AGGCCCTGAACCGGCCGGCCACCTACCCGACCAAGTACTTCGGTTGCGAGCTGGGGGCCC 79744 Query 6355 AGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCA 6414 |||||||| | || ||| ||||| |||| |||||| ||||| | || | | |||| Sbjct 79745 AGACGCAGCTGGACGCCAAGAACGACCGCTACATCGTCAACGGGGCCCACGAGGCGGCCA 79804 Query 6415 AGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTG----TCGGGAATGC 6470 ||||||||||| | || |||||||| || ||| | ||||| || ||| ||| Sbjct 79805 AGCTGCAGGACATCCTGGACGGCTTCATCCGCCGCTACGTGCTTTGCGCCTCG----TGC 79860 Query 6471 GATAACCCGGAGACCGAGCTTATTGTGTCTAC----CAAGAGAAACACCATCTCTCAGGG 6526 || ||||| ||||| | ||| ||| || | |||| | || || | | || Sbjct 79861 GACAACCCCGAGACGGTGCTCGGGGTG-CTGCAGCGCAAGGGGCTCATCACCACCAAG-- 79917 Query 6527 CTGCAAAGCGTGCGGTTACCATGGCAAGCTGGATTTATCACACAAACTCAACACCTTCAT 6586 ||| |||||||| || |||| || || | ||||| |||||||||||||| Sbjct 79918 -TGCCGGGCGTGCGGCCACAGCGGCACCCTCGACGGGGCCCACAAGCTCAACACCTTCAT 79976 Query 6587 ACTGAAGAATCCTCCACC 6604 || ||||| || || || Sbjct 79977 CCTCAAGAACCCGCCGCC 79994 >seq277972 Length=8070 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 2858 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2917 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2918 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2952 >seq203853 Length=1047 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 388 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 447 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 448 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 482 >seq56264 Length=1222 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 425 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 484 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 485 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 519 >seq14242 Length=8668 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 7838 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAGGGAATCTCGT 7779 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 7778 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 7744 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 5466 CTCTCTATTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 5407 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||| ||| Sbjct 5406 GGTGATATTTAGCTTTA 5390 >seq339008 Length=1323 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||| || ||||||||||||| || ||||| || Sbjct 187 AAGCCCGTTCCCTTGGCTGTGGTTTCGTTAAATAGTAGATAGGGACAGCGGGAATCTTGT 128 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 127 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 93 >seq234975 Length=487449 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||| || ||||||||||||| || ||||| || Sbjct 222 AAGCCCGTTCCCTTGGCTGTGGTTTCGTTAAATAGTAGATAGGGACAGCGGGAATCTTGT 281 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 282 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 316 >seq118272 Length=246527 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||||| |||| ||||| ||| ||| || || ||||||||||| ||| Sbjct 50322 CCACCGCGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATATTGTAATCCGAC 50263 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | || || |||||||| || || || || ||||||| || Sbjct 50262 AGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGAGGA 50203 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| |||||| |||||| |||||| |||| || || || | || || Sbjct 50202 ATGCCTTCCTTGTCCTGAATTTTGGCCTTCACGTTCTCGATTGTGTCGCTGGGCTCCACC 50143 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | ||| || || ||||| || | |||||| ||||| ||||||||| Sbjct 50142 TCCAGTGTGATTGTCTTACCGGTGAGGGTTTTGACGAAGATCTGCATG 50095 >seq11998 Length=14069 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||| |||||||||||| |||||| ||||||||| || |||||||| Sbjct 10420 AAGCCCGTTCCCTCAGCTGTGGTTTCGTTAGATACTAGATAGGGACAGTGGGAATCTCGT 10361 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||| |||||||||||| Sbjct 10360 TAATCCAGTCATGCGCGTCACTGATTAGATGACGA 10326 >seq88502 Length=1324 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 83 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTGAACTATCGGTCTCTC 142 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||||||||| Sbjct 143 GGACGTATTTAGCCTTA 159 >seq363558 Length=1084 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 95 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTGAACTATCGGTCTCTC 36 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||||| ||| Sbjct 35 GGACGTATTTAGCTTTA 19 >seq223904 Length=1153 Score = 102 bits (112), Expect = 5e-17 Identities = 76/89 (85%), Gaps = 5/89 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA-----GGGGGTAATCTCGT 25956 ||||||||||||||| |||||||||||||||||||| |||| | || ||||| || Sbjct 344 AAGCCCGTTCCCTTGACTGTGGTTTCGCTAGATAGTCGATAAAGACAGTGGGAATCTTGT 403 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGA 25985 |||||| ||||||||||||||||||||| Sbjct 404 TAATCCAGTCATGCGCGTCACTAATTAGA 432 >seq136126 Length=9026 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||| ||||||||||||||||||| |||||||||| | Sbjct 8247 CTCTCTCTTCAAAGTTCTTTTCAAGTTTCCCTCACGGTACTTGTGACGTATCGGTCTCTC 8188 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||||||||| Sbjct 8187 GGACGTATTTAGCCTTA 8171 >seq112571 Length=10328 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 4566 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTGAAGTATCGGTCAGTC 4625 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||| Sbjct 4626 AGACGTGTTTAGCCTTA 4642 >seq254760 Length=6557 Score = 84.2 bits (92), Expect = 1e-11 Identities = 78/102 (76%), Gaps = 14/102 (14%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG--------------G 25947 |||||||||||||||||||||||||||||| |||||| |||||| | Sbjct 6046 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTACATAGTATATAGGGAAGATAGGGACAGTAG 6105 Query 25948 TAATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | || ||||| || |||||| ||||||||||||||||||| Sbjct 6106 GAGTCCCGTTAGCCCATTCATGTGCGTCACTAATTAGATGAC 6147 >seq77693 Length=7137 Score = 84.2 bits (92), Expect = 1e-11 Identities = 58/66 (88%), Gaps = 5/66 (8%) Strand=Plus/Plus Query 25931 AGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGA 25985 || |||||||||||| || |||||||||||||| |||||||||||||||||||||| Sbjct 5925 AGCTAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 5984 Query 25986 TGACGA 25991 |||||| Sbjct 5985 TGACGA 5990 >seq340219 Length=1260 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25903 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTT 25957 |||||| |||||||||||||||| | |||| ||||| || ||| || | |||||| Sbjct 820 AGCCCGATCCCTTGGCTGTGGTTGCACTAGGTAGTAAATTGGGACAGTGGGAGACTCGTT 761 Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGACGAT 25992 ||| |||||||||||||||||| | ||||||| Sbjct 760 GGTCCATTCATGCGCGTCACTAATAATGTGACGAT 726 >seq317276 Length=1047 Score = 82.4 bits (90), Expect = 5e-11 Identities = 56/63 (89%), Gaps = 5/63 (8%) Strand=Plus/Plus Query 25934 TAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGATGA 25988 |||||||||||| || |||||||||||||| ||||||||||||||||||||||||| Sbjct 471 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 530 Query 25989 CGA 25991 ||| Sbjct 531 CGA 533 >seq247137 Length=1163 Score = 82.4 bits (90), Expect = 5e-11 Identities = 56/63 (89%), Gaps = 5/63 (8%) Strand=Plus/Plus Query 25934 TAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGATGA 25988 |||||||||||| || |||||||||||||| ||||||||||||||||||||||||| Sbjct 448 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 507 Query 25989 CGA 25991 ||| Sbjct 508 CGA 510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 333438871211852