Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq16628 610 8e-170 >seq16628 Length=231947 Score = 610 bits (676), Expect = 8e-170 Identities = 1503/2268 (66%), Gaps = 26/2268 (1%) Strand=Plus/Plus Query 61841 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 61900 ||||||| ||| ||||| |||| | || ||||| || |||| ||| |||||||| Sbjct 198615 TTGTCCACTGTAAATTGGATGGCATTTACAGCAGGTTTGGTTCGTAAATAATACATTCCA 198674 Query 61901 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 61960 ||||| || || || |||| || ||||||||||||| || ||||| ||| | || Sbjct 198675 GTTTTCAGTCCAAGTTTCCAACCACAAAAATGCATACTTGTAAGTTTTCCATACGTTGGC 198734 Query 61961 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62020 | || || || ||||||| ||||||||||| || | ||| ||||| | ||||| | | Sbjct 198735 TGAGCGATGTGTATATTCAGTGATTGACTTTGGTCCACGAAAGCTCCGCGATCTGCCGAC 198794 Query 62021 ATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 62079 |||| | ||| |||| || | ||||||||| | ||| ||| ||| ||||| || Sbjct 198795 ATTTCCAAAATATTCTTCTGAGAAATTTCCCACACAGTGCGATACAACATTTTTAAT-TC 198853 Query 62080 TTCTGGAAGGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTC 62139 || || | || || |||| || ||| | || || | ||| || | | Sbjct 198854 TTTAGGTATATTCAGCTTTTGAACAGAACCATTGTTAGCAATCAGTTCATTTTTTAAGTT 198913 Query 62140 ATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAA 62199 || |||||||| || ||| || | | |||||| |||| |||| ||||| Sbjct 198914 GTCGTTCCATAAACCGAGACGCGTCAAATCTTTCAAGAGATGGTGATTTACTATCTGAAA 198973 Query 62200 TTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATT 62259 ||||||||| | ||| | |||||| || | ||| || || || ||||||| | ||| || Sbjct 198974 TTCTCCAGAAAGTACGCGCCGAGTATACACATTGCTAGTGTATGGTTCCATTGCCTCGTT 199033 Query 62260 ATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCT 62319 ||| || | ||| || ||||| ||||| || ||||| ||||| || | | |||||| | Sbjct 199034 ATTACCAAGAATCTGCGCAGTAGATGCTGTTGGCATTGGTGCTACGAGAAGACTATTGCG 199093 Query 62320 AAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTAC 62379 | || | || | ||| | ||||||| || ||||| ||| || | || ||| Sbjct 199094 GATTCCAAAGCTTTTAATTCTTTCTTTTAAAGCAGACCAATCCCACAGGTTTGAAGGTGT 199153 Query 62380 AACNNNNNNNNNNNNNNNTTGTAGAATACCGT----TACTGGCGTACGATCCTACATATG 62435 || || || || || | |||||| ||| | ||| | Sbjct 199154 TACATTCCACATATCGTACTGAAGGATTCCTTGTGATACTGGACTACCAGGGTAC----G 199209 Query 62436 TATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAA 62495 | ||||| || || ||| | || |||||||||||| | || || || || ||||| | Sbjct 199210 TCTCGTACGGACCAAACTTTTTAGACAGTTCACAACTCTCTTCCAAAGCTCCATAATATA 199269 Query 62496 TGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTA 62555 | ||||| ||||| |||||||| | || ||||| | || || ||| ||| Sbjct 199270 TTGTTTCAAAGATTTTCTTATTAATTTCACAAGCTTCGTCACAGTCGAAAGGAAGTCTTA 199329 Query 62556 AGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 62615 | | ||| || ||||| || || ||||| || || || || ||||| | ||| | | | | Sbjct 199330 ATAAAATGAAAGCGTCGGCCAAACCTTGGACTCCGATTCCAATAGGGCGATGCCGCATGT 199389 Query 62616 TAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 62675 | || | || ||||| ||||| ||||||||||||| ||| || |||||||| | |||| Sbjct 199390 TTGAAAGTTTCGCTTCGGGAATTGGATAATAATTAACATCGATTATTTTATTCAAGTTTC 199449 Query 62676 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATTACAA 62735 | | ||| | || | || ||| |||||| || | |||| || | Sbjct 199450 TAGTTACGACTCTAGTTACTTGACGCAATTTTTCAAAATCGAAGTGTCCATGATAAACGA 199509 Query 62736 ACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 62795 | ||||| |||| || || | |||||| ||||| ||||| | | | || || | Sbjct 199510 ATCGATTCAAAGCAATCGACGCTAAATTACACACGGCAACCTCGTCAACGGACGTGTACT 199569 Query 62796 GTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCT 62855 || || || || || ||||||||||| || || || || | |||| |||||| | Sbjct 199570 CTACGATTTCGGTACATAGATTACTACATTTTATTGTACCGACGTTTTTTTGATTCGATT 199629 Query 62856 TTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTA 62915 || | || || || || || || | || |||| ||||||||||| | || ||||| | Sbjct 199630 TTCTATTGCAGGCGTCTTTGTATAACATATATGGCGTACCAGTTTCCGTTTGTGATTCGA 199689 Query 62916 TAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTC--TTTC 62973 |||| || |||||| | | || | | || || | |||||| | || Sbjct 199690 TAATTGCACTCCAGAGTTGTTGTGCACGAACTT--GACGCCGATAACGTTTCTCCGTCTC 199747 Query 62974 GTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTC 63033 |||| | || | | |||||| || || || | |||| | ||| ||||| ||| Sbjct 199748 GTATCGAACGTAAAGTTTTTCGAAGTCTTCGCCGTATACATCTTGCAGGTGAGGACTTTC 199807 Query 63034 ATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGG 63093 | ||||||||||||||||| ||| || || | ||| | |||||| || | ||| || Sbjct 199808 GTGTGGACACATCAACGACCATATTCCATCTTCTTCCACCCTTTTCATGAATAAATCGGG 199867 Query 63094 AATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 63153 |||||| | | | ||| ||||| | | ||| || || || || ||||| ||||| Sbjct 199868 AATCCACAAACCGTAAAAAAGATCACGTGCCCTACTCTCTTCTTTACCGGTATTTTTTTT 199927 Query 63154 AAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCC 63213 ||||| | || | | | ||| | ||||||||||||| || ||||| || |||| Sbjct 199928 TAGATCCAAAAAATCGAACACATCTGCGTGCCACGGTTCCAGATAGATGGCGATCGCTCC 199987 Query 63214 AGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 63273 || | |||||| || |||||||| | ||| | || ||||| ||||| |||| | ||| Sbjct 199988 CGGTCTTTTGTTGCCACCCTGATCGACGTAACGTGCCGTGTTGTTATACACTCGTAGCAT 200047 Query 63274 TGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT 63333 || | |||||| || ||||||||||| || |||| || || |||||| |||||||| Sbjct 200048 GGGTACAATACCGTTCGATGTACCATTTGTTCCTGCTATGTAACTTCCAGAAGCACGAAT 200107 Query 63334 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 63393 || || | |||||||| || ||| ||| || || | ||| || |||| | Sbjct 200108 GTTGTGTATGTTAATTCCTATTCCACCAGCCGATTTTGAAATGAGTGCACACTGTTTCAG 200167 Query 63394 CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACAT 63453 ||||| || || || ||||| ||||| || |||| | | || |||||| || |||| Sbjct 200168 TGTATCGTATATTCCTTCTATGCTATCGTCTTTCATTTGCAATAAAAAACAACTCGACAG 200227 Query 63454 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTC 63513 ||| | | ||| || || || || | || ||||| || || |||||||||||||| Sbjct 200228 TTGCGGTTTAGGAGTCCCAGCGTTGAAAAGTGTGGGAGATGCTTGCGTAAACCATTTTTC 200287 Query 63514 AGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGC 63573 ||| | || |||||||| ||||| || | | ||| ||||| || | | Sbjct 200288 AGACATGAGGTTGTACGTTTCAATCGCACTGCTAAGATCGTCCCCGTGAATGCCAATCGA 200347 Query 63574 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTA 63633 || ||||| | |||||| || || | || || | || || || || | || | Sbjct 200348 AACGCGCATAAGCATGTGTTGTGGCCGCTCTACAACTTTCCCATTAATCTTGAGTAAATG 200407 Query 63634 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATA 63691 | |||||| || ||||| ||||| ||||| || ||||| || || ||||||| Sbjct 200408 CGCACGTTCCAATGTCTTAAATCCAAAGTAGTTATAATTGAAA--TCGCGATCGTAAACG 200465 Query 63692 ATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTA-CATCCATGGTAATACTTGAAAT 63750 || |||||| | ||| || || |||| | | | ||| | | | ||| Sbjct 200466 ATGGACGAGTTTAAAAAATCTGCATTATTCATAACGATCTTATATGTTTCTTC-GCTAAT 200524 Query 63751 AATAGGAAAATGTTTCCCATTTTTAGGATTGA-CATAGTTGA-ATAAATCCTCCATCACT 63808 || || | ||| || || | ||| | |||| ||| ||||||| |||||| Sbjct 200525 CATGGGCGTAGATTTTCCGTTAGTTTCATTTACCATA--TGATATAAATCAGTCATCACC 200582 Query 63809 TCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGA 63868 || ||||| | ||||| ||||||||||||| ||| || | ||| | || || |||||| Sbjct 200583 TCGCTAAAAACCTTTTTCGTTTCTTTGTGTAAATTAGAAATGGCGAGTCGCGCTGCTAGA 200642 Query 63869 ATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCC 63928 |||||||| || || |||| ||||| || || || |||| ||||| | | | ||| Sbjct 200643 ATGGCATAGTCTGGGTGTTTCGTAGTCATCGTTGCAGCAGTTTCTGCTGCTAAATTATCC 200702 Query 63929 AATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATA 63988 | ||| || || ||||| || ||||| ||| ||| | ||| | | || || | | Sbjct 200703 AGTTCCACTGTCGTTACGCCTGGATATAATCCGACGATCA-CTTTTTGGGTAATTACACA 200761 Query 63989 -GGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTGATTTT 64047 ||||||| ||| ||||| | |||||||| | ||| ||||| ||||| || ||||| Sbjct 200762 GGGATCTACGAAATCTGTGTTCAGCCCATAACAAAGTTTACTAATGCGAGACGTTATTTT 200821 Query 64048 ATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGACAAACAT 64095 || || || | |||| | |||||| || || | |||||||| Sbjct 200822 GTCGAAGTGGATACTTTCGTGTCTTCCATTCCGCTTGACCACAAACAT 200869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 630705475563200