Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq118272 134 1e-26 >seq118272 Length=246527 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||||||| ||||||| || ||||||| ||||||| ||| | | Sbjct 50780 ATGCAAATCTTTGTAAAGACTCTGACCGGCAAGACCATCACCCTCGAAGTTGAGCCCAGT 50839 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||||| | ||| ||| ||| ||||| || || |||||||||||||| Sbjct 50840 GATACCATCGAAAACGTCAAGGCAAAGATCCAAGACAAGGAGGGCATTCCACCTGACCAG 50899 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||||||| | || || | ||||| || || ||||| Sbjct 50900 CAGCGTCTCATCTTCGCCGGCAAACAACTCGAGGACGGCCGCACGCTGTCAGACTACAAC 50959 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| ||||| || ||| | ||||| Sbjct 50960 ATCCAGAAAGAGTCCACCCTTCATCTTGTGCT 50991 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||| ||| ||||||| || |||| || |||| || ||| | | Sbjct 51008 ATGCAAATTTTTGTAAAAACTCTGACCGGCAAGACCATTACTCTCGAGGTCGAGCCCAGT 51067 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| |||| || ||| ||||| ||||||||||| || |||||| Sbjct 51068 GACACCATCGAAAACGTGAAAGCCAAGATCCAGGACAAGGAAGGGATTCCTCCGGACCAA 51127 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || || | ||| || || || ||||| Sbjct 51128 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGTACCCTGTCGGACTACAAC 51187 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || ||||||||||| || || | || || |||| | || |||| Sbjct 51188 ATCCAGAAAGAATCCACCCTCCACCTGGTTCTGCGGCTCCGCGGTGGAA 51236 Score = 109 bits (120), Expect = 5e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | |||||||| | |||||| | || |||||| | Sbjct 50096 ATGCAGATCTTCGTCAAAACCCTCACCGGTAAGACAATCACACTGGAGGTGGAGCCCAGC 50155 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| ||||| | |||| ||| ||||| ||||| ||||| || || || Sbjct 50156 GACACAATCGAGAACGTGAAGGCCAAAATTCAG-GACAAGGAAGGCATTCCTCCCGATCA 50214 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||||||||| || | ||||||| || || || |||||||| Sbjct 50215 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTCGAAGATGGCCGAACCCTGTCGGATTACAA 50274 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||| || ||||| ||||| || || Sbjct 50275 TATCCAGAAAGAGTCCACCCTTCA 50298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431376644391980