Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq345775 104 3e-17 seq212620 104 3e-17 seq67892 104 3e-17 seq17663 102 9e-17 seq346528 95.1 1e-14 seq297272 89.7 6e-13 >seq345775 Length=1263 Score = 104 bits (114), Expect = 3e-17 Identities = 76/87 (87%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| |||||||| |||||||||||||||||||||| |||||| ||||| || Sbjct 135 AGTCAGGGTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGT--CCTCGAGAGAGG 78 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||| ||||||| Sbjct 77 GCGTGGGTTCGAACCCCACTCCTGACA 51 >seq212620 Length=5608 Score = 104 bits (114), Expect = 3e-17 Identities = 76/87 (87%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| |||||||| |||||||||||||||||||||| |||||| ||||| || Sbjct 4636 AGTCAGGGTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGT--CCTCGAGAGAGG 4693 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||| ||||||| Sbjct 4694 GCGTGGGTTCGAACCCCACTCCTGACA 4720 >seq67892 Length=16381 Score = 104 bits (114), Expect = 3e-17 Identities = 76/87 (87%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| |||||||| |||||||||||||||||||||| |||||| ||||| || Sbjct 614 AGTCAGGGTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGT--CCTCGAGAGAGG 671 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||| ||||||| Sbjct 672 GCGTGGGTTCGAACCCCACTCCTGACA 698 >seq17663 Length=183429 Score = 102 bits (112), Expect = 9e-17 Identities = 81/96 (84%), Gaps = 6/96 (6%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGAG 126321 |||||| ||||||||||||||||||||||||||||||| |||||| |||| | | | Sbjct 177547 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGT--CCTCGTAAGAGGG 177490 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||||||||||| |||||||| | || || Sbjct 177489 CGTGGGTTCGAACCCCACTTCTGACAAACTTTTTTT 177454 >seq346528 Length=583361 Score = 95.1 bits (104), Expect = 1e-14 Identities = 89/110 (81%), Gaps = 9/110 (8%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAG---- 126321 |||||| |||||||||||||||||||||||| |||||| |||||| ||||| || Sbjct 147556 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGGTTTAAGCTCTGGT--CCTCGTAAGAGGT 147613 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAA--TTATTATTGGAATTTTTGTT 126369 |||||||||||||||||| |||||| | | ||| | |||||||| || Sbjct 147614 CGTGGGTTCGAACCCCACTTCTGACATACCTCCTTAGT-GAATTTTTTTT 147662 >seq297272 Length=244611 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 93133 CTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGC 93192 ||| |||||||| || | || || | ||||| || ||||| ||||| || || || || Sbjct 163554 CTCGTTGCTGAAGGTGAGGCCGGGCATGAGTCCCCGCTTCTTCAGCCAGAAGATGGATGC 163495 Query 93193 AAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA 93252 || || || || || || || || ||||||||||| || || || || ||| |||| Sbjct 163494 GAACGATCCCGAGAAGAAGATGCCCTCGACGGCTGCAAACGCGACGATGCGCTCGCCAAA 163435 Query 93253 ATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGG 93312 | ||| |||||||||| |||| ||||| || || || ||||||| || || Sbjct 163434 TGTGGCGCTGCGGTTGCTGATCCAGTTTAGTGCCCAGTCCGCCTTCCTCTTAATGCAGGG 163375 Query 93313 TAGTGTTTCGATAGCGTTAAATAG 93336 | || || | ||||| ||||| Sbjct 163374 CATCGTCTCAACGGCGTTGAATAG 163351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554288854866080