Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq16628 145 6e-30 seq118272 143 2e-29 >seq16628 Length=231947 Score = 145 bits (160), Expect = 6e-30 Identities = 425/650 (65%), Gaps = 15/650 (2%) Strand=Plus/Plus Query 129679 ACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTG 129738 || ||| |||| | | |||||| || ||||| || |||||| |||| | || Sbjct 199506 ACGAATCGATTCAAAGCAATCGACGCTAAATTACACACGGCAACCTCGTCAACGGACGTG 199565 Query 129739 TACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTA 129798 ||||| || ||||||| || | ||||||| ||| || || || | | |||||||| Sbjct 199566 TACTCTACGATTTCGGTACATAGATTACTACATTTTATTGTACCGACGTTTTTTTGATTC 199625 Query 129799 CTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCGTT 129858 ||| | ||||| || |||||||| | ||| || ||||| || ||||| ||| | | Sbjct 199626 GATTTTCTATTGCAGGCGTCTTTGTATAACATATATGGCGTACCAGTTTCCGTTTGTGAT 199685 Query 129859 TCGACAATGGTCCTGAACAAGTCTCGAGC-----CTTGATCTGTCTTACAAATTTGCCAC 129913 |||| ||| | || | | | | | || ||||| | | || || | | Sbjct 199686 TCGATAATTGCACTCCAGAGTTGTTGTGCACGAACTTGACG---CCGATAACGTTTCTCC 199742 Query 129914 ATTTCTCGTATGCCACATACAGTTGTTCAAATTCTGAGCCGTGTACGGTGTCGAGCAACG 129973 | ||||||| || || |||| ||| || ||| ||||| ||| | || | Sbjct 199743 GT--CTCGTATCGAACGTAAAGTTTTTCGAAGTCTTCGCCGTATACATCTTGCAGGTGAG 199800 Query 129974 GCGATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACA 130033 | ||| | ||||||||||| ||| |||||||| |||| || | |||||| || | Sbjct 199801 GACTTTCGTGTGGACACATCAACGACCATATTCCATCTTCTTCCACCCTTTTCATGAATA 199860 Query 130034 AATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCTATCCTCGGCACCCATGT 130093 ||||||| | ||||| |||| || | ||| || || | || || || ||| | | Sbjct 199861 AATCGGGAATCCACAAACCGTAAAAAAGATCACGTGCCCTACTCTCTTCTTTACCGGTAT 199920 Query 130094 TACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCA 130153 | ||| || || | |||||| | | || |||||||||||||| | ||| || || | Sbjct 199921 TTTTTTTTAGATCCAAAAAATCGAACACATCTGCGTGCCACGGTTCCAGATAGATGGCGA 199980 Query 130154 TTGCGCCCTTCCGT---TTGCCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTC 130210 | || ||| | | ||||| || || || |||| || | | ||||| || |||| Sbjct 199981 TCGCTCCCGGTCTTTTGTTGCCACCCTGATCGACGTAACGTGCCGTGTTGTTATACACTC 200040 Query 130211 GCAACATTGCCTCCAAT-CCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGA 130269 | | || || | |||| ||||| | || || ||||| | | ||| |||| ||| | Sbjct 200041 GTAGCA-TGGGTACAATACCGTTCGATGTACCATTTGTTCCTGCTATGTAACTTCCAGAA 200099 Query 130270 GCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATAT 130319 || |||| ||| || | | | | ||||| || || | ||||||| || Sbjct 200100 GCACGAATGTTGTGTATGTTAATTCCTATTCCACCAGCCGATTTTGAAAT 200149 >seq118272 Length=246527 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||| | ||||| || || |||| || ||||| || ||| Sbjct 50780 ATGCAAATCTTTGTAAAGACTCTGACCGGCAAGACCATCACCCTCGAAGTTGAGCCCAGT 50839 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| ||| || |||||||||||||| |||||||| || || Sbjct 50840 GATACCATCGAAAACGTCAAGGCAAAGATCCAAGACAAGGAGGGCATTCCACCTGACCAG 50899 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || ||||||||||| | ||||| |||||| | || || |||||| Sbjct 50900 CAGCGTCTCATCTTCGCCGGCAAACAACTCGAGGACGGCCGCACGCTGTCAGACTACAAC 50959 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||| |||||| | ||| | || ||||| | || || || Sbjct 50960 ATCCAGAAAGAGTCCACCCTTCATCTTGTGCTGCGACTTCGTGGTGG 51006 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| | |||||||| || |||| || || ||||| ||| | Sbjct 50096 ATGCAGATCTTCGTCAAAACCCTCACCGGTAAGACAATCACACTGGAGGTGGAGCCCAGC 50155 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || |||||||| |||||||| || ||||| |||||||| Sbjct 50156 GACACAATCGAGAACGTGAAGGCCAAAATTCAGGACAAGGAAGGCATTCCTCCCGATCAG 50215 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||| ||| | || ||| ||| ||| | || |||||||| Sbjct 50216 CAGCGTCTGATCTTTGCCGGCAAGCAGCTCGAAGATGGCCGAACCCTGTCGGATTACAAT 50275 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||| |||||| | || | || |||| ||||||| || Sbjct 50276 ATCCAGAAAGAGTCCACCCTTCACCTGGTCCTGCGTCTGCGCGGTGG 50322 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||||| | ||||| || || | ||||| || || || ||| Sbjct 51008 ATGCAAATTTTTGTAAAAACTCTGACCGGCAAGACCATTACTCTCGAGGTCGAGCCCAGT 51067 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | ||| || || || |||||||| || ||||| || || ||| Sbjct 51068 GACACCATCGAAAACGTGAAAGCCAAGATCCAGGACAAGGAAGGGATTCCTCCGGACCAA 51127 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||| ||| | ||||| || ||| | || || |||||| Sbjct 51128 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGTACCCTGTCGGACTACAAC 51187 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || |||||||||||| | || | ||| |||| | ||||| || Sbjct 51188 ATCCAGAAAGAATCCACCCTCCACCTGGTTCTGCGGCTCCGCGGTGG 51234 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| | ||||| ||||| |||| || || ||||| | | | Sbjct 49640 ATGCAGATCTTCGTCAAAACCCTGACCGGGAAAACCATCACGCTCGAGGTGGAGCCGAGC 49699 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || ||||||||||||||||| || || ||||| || Sbjct 49700 GACACGATTGAAAACGTGAAGGCTAAGATTCAAGACAAGGAGGGGATCCCGCCCGACCAG 49759 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || |||||||| ||| | || || |||||| | ||||| |||||| Sbjct 49760 CAACGTCTGATCTTCGCCGGCAAGCAGCTTGAAGACGGACGCACCTTGTCCGACTACAAC 49819 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || |||||| | || | || |||| |||||||||| Sbjct 49820 ATTCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGGCTGCGCGGAGG 49866 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || | || || || ||| |||| || || || || | | | Sbjct 49868 ATGCAGATTTTTGTCAAGACCCTCACTGGCAAGACGATCACGCTCGAGGTTGAGCCGAGC 49927 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || ||||| || ||||||||||| || || || ||||| Sbjct 49928 GACACGATCGAAAACGTGAAGGCCAAAATCCAGGACAAGGAGGGAATCCCCCCGGATCAG 49987 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| || | ||||| ||| ||| ||||||| |||||| Sbjct 49988 CAGCGTCTGATCTTCGCCGGCAAGCAACTCGAGGACGGCCGTACCCTCTCCGACTACAAC 50047 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||| |||||| | || | || |||| ||||||| || Sbjct 50048 ATCCAGAAAGAGTCCACCCTTCACCTGGTCCTGCGTCTGCGCGGTGG 50094 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || |||| || || || || ||| | Sbjct 51236 ATGCAAATCTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTCGAGCCCAGC 51295 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || || |||||||| || ||||| || || || Sbjct 51296 GACACCATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCGGACCAG 51355 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| || || ||||| || ||| ||| ||| | |||||||||||| Sbjct 51356 CAGCGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGAACCCTGTCCGATTACAAC 51415 Query 22399 ATTCAAAAAGAATCCACC 22416 || ||||| || |||||| Sbjct 51416 ATCCAAAAGGAGTCCACC 51433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417837887690980