Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq327295 78.8 2e-11 seq285576 78.8 2e-11 >seq327295 Length=58918 Score = 78.8 bits (86), Expect = 2e-11 Identities = 96/131 (73%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 3367 TGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATC 3426 ||||| || |||| || ||| |||| || | || |||| |||| | | |||||| Sbjct 16144 TGTACCTTCCACATGTATGGTTCTTCCGGAGACGTGCAAAAGCACGATGCCATGTGCATC 16085 Query 3427 CTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCTACGTG 3486 || || ||| | ||||||||||||||||| | |||||||||||||||||| | | Sbjct 16084 CTGCCCATCAACATCATCAACGAGAAGATCTACGTCTTCCTCTGGTTCTGGTTCATCATT 16025 Query 3487 CTAGCCATCAT 3497 || || ||||| Sbjct 16024 CTGGCGATCAT 16014 >seq285576 Length=46296 Score = 78.8 bits (86), Expect = 2e-11 Identities = 96/131 (73%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 3367 TGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATC 3426 ||||| || |||| || ||| |||| || | || |||| |||| | | |||||| Sbjct 2878 TGTACCTTCCACATGTATGGTTCTTCCGGAGACGTGCAAAAGCACGATGCCATGTGCATC 2937 Query 3427 CTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCTACGTG 3486 || || ||| | ||||||||||||||||| | |||||||||||||||||| | | Sbjct 2938 CTGCCCATCAACATCATCAACGAGAAGATCTACGTCTTCCTCTGGTTCTGGTTCATCATT 2997 Query 3487 CTAGCCATCAT 3497 || || ||||| Sbjct 2998 CTGGCGATCAT 3008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12429564342000