Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq118272 147 2e-30 >seq118272 Length=246527 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || || | || ||| | || | || |||||||| || |||||||| || Sbjct 51237 ATTCCACCGCGGAGCCGCAGAACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCC 51178 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| || ||||| || || || || ||||||||||||||||||||||| Sbjct 51177 GACAGGGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGA 51118 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||||| ||| | | ||| | |||||| ||| ||| Sbjct 51117 GGAATCCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTTTCGATGGTGTCACTGGGCTCG 51058 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | || |||||||||||||||||||||||||| |||||| Sbjct 51057 ACCTCGAGAGTAATGGTCTTGCCGGTCAGAGTTTTTACAAAAATTTGCATG 51007 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| |||| || || | ||| | || || ||||| || |||||||| || Sbjct 51009 ATGCCACCACGAAGTCGCAGCACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCT 50950 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || || || |||||||| || ||| ||||||||||||| ||||| || Sbjct 50949 GACAGCGTGCGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGT 50890 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| |||||| || | | ||| | ||| || ||| || Sbjct 50889 GGAATGCCCTCCTTGTCTTGGATCTTTGCCTTGACGTTTTCGATGGTATCACTGGGCTCA 50830 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || |||||||||||||| |||||||| || |||||| Sbjct 50829 ACTTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTTACAAAGATTTGCATG 50779 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| |||| || || | ||| | ||||| ||||| || |||||||| || Sbjct 50781 ATGCCACCACGCAGTCGCAGCACCAGATGGAGGGTAGACTCTTTCTGGATGTTGTAGTCC 50722 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || ||| |||||| || || || ||||| |||| |||||||| || || ||| Sbjct 50721 GACAGGGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCGGGA 50662 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||| || || | | || | ||||| ||| || Sbjct 50661 GGAATACCTTCCTTGTCCTGAATTTTCGCCTTCACGTTCTCGATCGTGTCACTGGGCTCC 50602 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| || | || |||||||||||||| || || || ||||||||| Sbjct 50601 ACCTCCAGTGTGATAGTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCATG 50551 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || ||||| |||||||||||| || || || |||||| | || || ||| Sbjct 51432 GTGGACTCCTTTTGGATGTTGTAATCGGACAGGGTTCGGCCATCTTCCAACTGCTTTCCA 51373 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||||||||| |||||||| ||||||||||| ||||| ||||| || Sbjct 51372 GCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTG 51313 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||||| ||| ||||| |||| ||| | || || || ||||| || Sbjct 51312 ACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTCCCCGTCAGGGTC 51253 Query 114366 TTTACAAAAATCTGCAT 114382 || || || || ||||| Sbjct 51252 TTCACGAAGATTTGCAT 51236 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || |||| || || || || || |||||||| || || || || |||||| Sbjct 50533 AACCAAGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTC 50474 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 ||||| || || ||| |||| | |||||| || ||||| || || ||||| ||||| Sbjct 50473 GAGTTGCTTGCCGGCGAAGATCAAACGCTGCTGATCCGGGGGGATCCCTTCCTTGTCCTG 50414 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 || || ||| | | ||||| ||||| ||| ||||| |||| || | ||||| Sbjct 50413 GATTTTGGCTTTGACATTTTCAATTGTGTCACTGGGCTCGACTTCCAGCGTGATGGTTTT 50354 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 |||||| || ||||| || || ||||||||| Sbjct 50353 GCCGGTGAGGGTTTTGACGAAGATCTGCATG 50323 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || ||||||||||| ||| || || || |||||||| || || || Sbjct 49836 GTGGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGTCCGTCTTCAAGCTGCTTGCCG 49777 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| ||||| || ||||| || || || || || ||||| |||||| || Sbjct 49776 GCGAAGATCAGACGTTGCTGGTCGGGCGGGATCCCCTCCTTGTCTTGAATCTTAGCCTTC 49717 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| |||||| | | || || || | || | ||||| |||||||| ||| Sbjct 49716 ACGTTTTCAATCGTGTCGCTCGGCTCCACCTCGAGCGTGATGGTTTTCCCGGTCAGGGTT 49657 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || || || ||||||||| || Sbjct 49656 TTGACGAAGATCTGCATGACT 49636 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || || |||||||| || || || |||||| || || || || Sbjct 50292 GTGGACTCTTTCTGGATATTGTAATCCGACAGGGTTCGGCCATCTTCGAGCTGCTTGCCG 50233 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| |||||||| || || |||||||||||||| ||||| ||| || || Sbjct 50232 GCAAAGATCAGACGCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGAATTTTGGCCTTC 50173 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || |||| || | || || ||||| || ||| Sbjct 50172 ACGTTCTCGATTGTGTCGCTGGGCTCCACCTCCAGTGTGATTGTCTTACCGGTGAGGGTT 50113 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 50112 TTGACGAAGATCTGCATG 50095 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| ||| | ||||| || || ||||| || || Sbjct 50064 GTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGTTGCTTGCCG 50005 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| |||||||| || ||||| || || || || ||||| || || || Sbjct 50004 GCGAAGATCAGACGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATTTTGGCCTTC 49945 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | |||||| | | || || || | || | ||| ||||| || || || Sbjct 49944 ACGTTTTCGATCGTGTCGCTCGGCTCAACCTCGAGCGTGATCGTCTTGCCAGTGAGGGTC 49885 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || ||||||||||||||| || Sbjct 49884 TTGACAAAAATCTGCATGCCT 49864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418242457597104