Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq297272 190 4e-43 seq128081 118 2e-21 seq244445 109 1e-18 >seq297272 Length=244611 Score = 190 bits (210), Expect = 4e-43 Identities = 176/223 (79%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||||| ||| | ||||||||||||||||| |||| ||||||||||||||| || ||| Sbjct 163351 CTATTCAACGCCGTTGAGACGATGCCCTGCATTAAGAGGAAGGCGGACTGGGCACTAAAC 163410 Query 42669 TGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 |||||| | | | ||| || || |||||| | | || || ||| | ||||||||| Sbjct 163411 TGGATCAGCAACCGCAGCGCCACATTTGGCGAGCGCATCGTCGCGTTTGCAGCCGTCGAG 163470 Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATG 42788 ||||||||||||||||| | ||||| |||||||||||||| ||| || || ||| Sbjct 163471 GGCATCTTCTTCTCGGGATCGTTCGCATCCATCTTCTGGCTGAAGAAGCGGGGACTCATG 163530 Query 42789 CCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 ||||| ||||||||| ||||| |||||||| ||||||||| Sbjct 163531 CCCGGCCTCACCTTCAGCAACGAGCTCATCAGTCGGGACGAGG 163573 >seq128081 Length=1306280 Score = 118 bits (130), Expect = 2e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 244941 AGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCAC-TCGCCGCCGTCC 244999 ||||||||| ||||| |||||| || |||||||| |||| || || | Sbjct 763406 AGACCTCGTGCAGGCCAGGGCACTCATGGGGACACATGAGGGACCACATCTGATCC-TGT 763348 Query 245000 TTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTC 245059 | |||| | ||||||| ||||| |||||||||||||| | |||||| |||| | || Sbjct 763347 TCCACCCGCCGCATGAACAGGTCTGGGATCCAGAGGGCGTAGAAGAGATCCCGTGCCCGG 763288 Query 245060 TGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAG 245119 | ||| ||| ||| |||||||| |||| |||| |||||||| ||||| ||||||| Sbjct 763287 TTCTCCTCCTTGCCCGTGTTCTTTTTCAGGTCCAGGAAGTCAAACACGTCCGCGTGCCAT 763228 Query 245120 GGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGT 245156 ||||||| ||| | || | || ||||||| || || Sbjct 763227 GGCTCCAGGTACATCGCAAATGCCCCGGGCCTCTGGT 763191 Score = 109 bits (120), Expect = 1e-18 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 244369 CTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTT 244428 || |||||| | ||||||| | || || || ||||||||||||||||||||||| ||| Sbjct 770524 CTTGGCCAGGTCACAGCTCGCCTCCAGCGCCCCGTAGTAGATGGTCTCGAAGATCTGCTT 770465 Query 244429 GTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGC 244488 ||| | || ||||| ||||| |||||| | | || || ||||| ||| || Sbjct 770464 GTTGAGCAGACGAGCCTTCTCGCAGTCGAAGGGCAGCCGCAGCAAGATGAACGTGTCCGC 770405 Query 244489 CAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA 244533 || |||||||| ||||| |||||||| | || | ||||||||| Sbjct 770404 CAAACCCTGCACTCCGATTCCGATGGGGCGATGGCTCTTGTTGGA 770360 Score = 107 bits (118), Expect = 4e-18 Identities = 98/121 (81%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 244720 GGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTG 244779 |||||||| | | ||||||||| ||||| ||||||||||||||||| |||| || || Sbjct 764253 GGTGTACTCAATGACCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCGAGGTTCTTCTG 764194 Query 244780 ATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG-AAGGGCCCCCCGGTCTCGAGCT 244838 ||||||||| |||||||||||| ||||| |||||| ||||| ||| ||||| | || Sbjct 764193 GTTGGACTTGCTGTTGCAGGCGTCTTTGTACAGCATGTAAGGGGTGCCC-GTCTCTATCT 764135 Query 244839 G 244839 | Sbjct 764134 G 764134 >seq244445 Length=1296 Score = 109 bits (120), Expect = 1e-18 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 244369 CTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTT 244428 || |||||| | ||||||| | || || || ||||||||||||||||||||||| ||| Sbjct 184 CTTGGCCAGGTCACAGCTCGCCTCCAGCGCCCCGTAGTAGATGGTCTCGAAGATCTGCTT 243 Query 244429 GTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGC 244488 ||| | || ||||| ||||| |||||| | | || || ||||| ||| || Sbjct 244 GTTGAGCAGACGAGCCTTCTCGCAGTCGAAGGGCAGCCGCAGCAAGATGAACGTGTCCGC 303 Query 244489 CAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA 244533 || |||||||| ||||| |||||||| | || | ||||||||| Sbjct 304 CAAACCCTGCACTCCGATTCCGATGGGGCGATGGCTCTTGTTGGA 348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 939977627753920