Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq8286 116 3e-21 seq16628 102 7e-17 seq266908 96.9 3e-15 >seq8286 Length=1257 Score = 116 bits (128), Expect = 3e-21 Identities = 412/638 (65%), Gaps = 13/638 (2%) Strand=Plus/Plus Query 20191 GTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATG 20250 ||| ||||||||||| || || |||||| ||| || || |||| ||||| || | Sbjct 451 GTAAATGTGGGCATCGCCTAAATTGTGAACAAATTCACCAGGTCGTTTTCCAGTCACCTT 510 Query 20251 AGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCAT 20310 || | ||| | || | || | || || ||||||||||| || || ||||| ||||| Sbjct 511 TGCCATCATGTGTGTGAGAAGAGCGTAACTCGCAATGTTAAACGGTACACCCAATCCCAT 570 Query 20311 GTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACA 20370 ||| | || | ||||||||| ||||| || |||||| | || |||| || || || Sbjct 571 GTCGGCAGAACGCTGATACAGTTGACACGAGAGCTCATCATCGTCTACGTAGAACTGTGC 630 Query 20371 TAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACAT 20430 || ||||||| || || || |||| | | || | || ||||||| ||| | Sbjct 631 CAAACAGTGACATGGTGGTAGGACCATTTTCTTAATATCTGTTGGATTCCACGAACATAA 690 Query 20431 AATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAA----TGTACGACAATT 20486 || |||| | |||| |||| |||||| || | || || | |||| | || Sbjct 691 TATCATTCGGCGGTCGTTGGGATCATTTTTGATGATTTCAACGAGTCTTGTA----ATTT 746 Query 20487 GGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCC 20546 | |||| || | | | |||||| | | || || || | || ||||| || | Sbjct 747 GATCAACACCTTCGTTTCCATAGTCTGTGTGCGAGTTTCTATAGGTGGCTCCAAAATGAC 806 Query 20547 TCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCC 20606 ||| ||||| ||||| || ||||| | |||||| || || | | || | Sbjct 807 GCCATTGGAATCCGTAGACCGGTCCAAGATCCCCTTCTTCTCGATCAAAAAAACCTAAGC 866 Query 20607 CGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCC-TGTTCTTGAAAGC 20665 | || || | || || |||| ||||||||| | | || |||| ||| | Sbjct 867 TATCGAGAAATCGACGAGAACCGTTTTGGTCCCATATGTGAATACCACGTTC-TGACAAT 925 Query 20666 TCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCCAA 20725 || ||| || ||| || |||||||| || || |||| ||| || ||||||||| Sbjct 926 TCTTTGGCATCGGTAGATCCGCGGAGAAACCAGAGAAGTTCTTCCACAACTCCTCGCCAA 985 Query 20726 AACACCCGCTTTGTGGTTAGT-AAGGGAAAGT--GGTCCCGCAGACTATACCTGGCCTGC 20782 || || || || || |||| | |||| | ||| || ||| || ||| || ||| Sbjct 986 AAAACGCGTTTGGTTGTTAATAAAGGCATAGTTCCGTTCCGGAGTGAATATCTACACTGT 1045 Query 20783 ATGCCAAATAGAGAGAGGGTGCCTATGCCGGTGCGGTC 20820 | ||||| | || | || |||| || |||||||| Sbjct 1046 ACACCAAAAATTGACATTGTTCCTACTCCAGTGCGGTC 1083 >seq16628 Length=231947 Score = 102 bits (112), Expect = 7e-17 Identities = 261/397 (66%), Gaps = 8/397 (2%) Strand=Plus/Plus Query 20191 GTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATG 20250 ||| ||||||||||| || || |||||| ||| || || |||| ||||| || | Sbjct 230597 GTAAATGTGGGCATCGCCTAAATTGTGAACAAATTCACCAGGTCGTTTTCCAGTCACCTT 230656 Query 20251 AGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCAT 20310 || | ||| | || | || | || || ||||||||||| || || ||||| ||||| Sbjct 230657 TGCCATCATGTGTGTGAGAAGAGCGTAACTCGCAATGTTAAACGGTACACCCAATCCCAT 230716 Query 20311 GTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACA 20370 || | || | |||||||| ||||| || |||||| | || |||| || || || Sbjct 230717 ATCGGCAGAACGCTGATACAATTGACACGAGAGCTCATCATCGTCTACGTAGAACTGTGC 230776 Query 20371 TAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACAT 20430 || ||||||| || || || |||| | | || | || ||||||| ||| | Sbjct 230777 CAAACAGTGACATGGTGGTAGGACCATTTTCTTAATATCTGTTGGATTCCACGAACATAA 230836 Query 20431 AATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAA----TGTACGACAATT 20486 || |||| | |||| |||| |||||| || | || || | |||| | || Sbjct 230837 TATCATTCGGCGGTCGTTGGGATCATTTTTGATGATTTCAACGAGTCTTGTA----ATTT 230892 Query 20487 GGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCC 20546 | |||| || | | | |||||| | | || || || | || ||||| || | Sbjct 230893 GATCAACACCTTCGTTTCCATAGTCTGTGTGCGAGTTTCTATAGGTGGCTCCAAAATGAC 230952 Query 20547 TCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTC 20583 ||| || || ||||| || ||||| | |||||| || Sbjct 230953 GCCATTGAAATCCGTAGACCGGTCCAAGATCCCCTTC 230989 >seq266908 Length=1092028 Score = 96.9 bits (106), Expect = 3e-15 Identities = 185/273 (68%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 20191 GTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATG 20250 ||| ||||||||||| || || |||||| ||| || || |||| ||||| || | Sbjct 125373 GTAAATGTGGGCATCGCCTAAATTGTGAACAAATTCACCAGGTCGTTTTCCAGTCACCTT 125432 Query 20251 AGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCAT 20310 || | ||| | || | || | || || ||||||||||| || || ||||| ||||| Sbjct 125433 TGCCATCATGTGTGTGAGAAGAGCGTAACTCGCAATGTTAAACGGTACACCCAATCCCAT 125492 Query 20311 GTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACA 20370 ||| | || | |||||||| ||||| || |||||| | || |||| || || || Sbjct 125493 GTCGGCAGAACGCTGATACAATTGACACGAGAGCTCATCATCGTCTACGTAGAACTGTGC 125552 Query 20371 TAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACAT 20430 || ||||||| || || || |||| | | || | || ||||||| ||| | Sbjct 125553 CAAACAGTGACACGGTGGTAGGACCATTTTCTTAATATCTGTTGGATTCCACGAACATAA 125612 Query 20431 AATGATTCTTCTATCGTGCGGATTATTTTTTAT 20463 || |||| | || | |||| |||||| || Sbjct 125613 TATCATTCGGCGGTCCTTGGGATCATTTTTGAT 125645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 439334253517280