Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq276186 93.3 3e-14 seq118272 93.3 3e-14 seq356670 82.4 6e-11 >seq276186 Length=1047 Score = 93.3 bits (102), Expect = 3e-14 Identities = 82/97 (85%), Gaps = 4/97 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-GATCTAAGGAAC 115587 |||||||| ||||||||||| |||| |||||||||||| || || |||||||||||| Sbjct 869 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGGA-AGAAACGATCTAAGGAAC 811 Query 115588 CAAAACTGATATATTGAGCCATTCGTGGTATCGTCTT 115624 || ||||||| || ||||||||||| ||| ||| ||| Sbjct 810 CATAACTGATTTAATGAGCCATTCGCGGTTTCGCCTT 774 Score = 93.3 bits (102), Expect = 3e-14 Identities = 82/97 (85%), Gaps = 4/97 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-GATCTAAGGAAC 114390 |||||||| ||||||||||| |||| |||||||||||| || || |||||||||||| Sbjct 869 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGGA-AGAAACGATCTAAGGAAC 811 Query 114391 CAAAACTGATATATTGAGCCATTCGTGGTATCGTCTT 114427 || ||||||| || ||||||||||| ||| ||| ||| Sbjct 810 CATAACTGATTTAATGAGCCATTCGCGGTTTCGCCTT 774 >seq118272 Length=246527 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | ||||||||| ||||| || || ||| |||||||||||||||||| || | | Sbjct 49866 CCTCCGCGCAGCCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 49807 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || |||| || | ||||||||||| || ||||| || ||||| || ||| Sbjct 49806 AAGGTGCGTCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGCGGG 49747 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCGCA 34079 | | ||| ||||| ||| || ||| | | ||| | | || | | || Sbjct 49746 ATCCCCTCCTTGTCTTGAATCTTAGCCTTCA-CGTTTTCAATCGTGTCGCTCGGCTCCAC 49688 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| ||| || ||||| ||||| || ||||| || ||||| ||||| Sbjct 49687 CTCGAGCGTGATGGTTTTCCCGGTCAGGGTTTTGACGAAGATCTGCAT 49640 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||| ||||| ||||| ||| ||| ||||| || |||||||| | | Sbjct 50322 CCACCGCGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATATTGTAATCCGAC 50263 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| | || || | |||||||||||||| ||||| ||||||||||| || Sbjct 50262 AGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGAGGA 50203 Query 34021 ACGCTCTCTTTGTCCATAATTTT 34043 | || || |||||| |||||| Sbjct 50202 ATGCCTTCCTTGTCCTGAATTTT 50180 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||| ||||| ||||| ||| ||| ||||| |||||||| || | Sbjct 50094 CCACCGCGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAG 50035 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | |||||||||||| || ||||| |||||||||||| || Sbjct 50034 AGGGTACGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGG 49975 Query 34021 ACGCTCTCTTTGTCCATAATTTT 34043 | | ||| |||||| ||||| Sbjct 49974 ATTCCCTCCTTGTCCTGGATTTT 49952 >seq356670 Length=1754 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/86 (84%), Gaps = 3/86 (3%) Strand=Plus/Plus Query 114344 TCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-GATCTAAGGAACCAAAACTGATA 114401 ||||||||| |||| ||||||||||| | || || |||||||||||||| ||||||| Sbjct 1645 TCTAGAATTGCCACAGTTATCCAAGT-AGGAAGAAACGATCTAAGGAACCATAACTGATT 1703 Query 114402 TATTGAGCCATTCGTGGTATCGTCTT 114427 || ||||||||||| ||| ||| ||| Sbjct 1704 TAATGAGCCATTCGCGGTTTCGCCTT 1729 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/86 (84%), Gaps = 3/86 (3%) Strand=Plus/Plus Query 115541 TCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-GATCTAAGGAACCAAAACTGATA 115598 ||||||||| |||| ||||||||||| | || || |||||||||||||| ||||||| Sbjct 1645 TCTAGAATTGCCACAGTTATCCAAGT-AGGAAGAAACGATCTAAGGAACCATAACTGATT 1703 Query 115599 TATTGAGCCATTCGTGGTATCGTCTT 115624 || ||||||||||| ||| ||| ||| Sbjct 1704 TAATGAGCCATTCGCGGTTTCGCCTT 1729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395274355052584