Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq118272 181 2e-40 >seq118272 Length=246527 Score = 181 bits (200), Expect = 2e-40 Identities = 180/232 (78%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| || | || || || |||| ||| ||||| ||||| || |||| Sbjct 50098 CATG-CCACCGCGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGT 50040 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| ||| || || ||||| || | ||| || || ||||||||||||||||| ||| Sbjct 50039 CGGAGAGGGTACGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCG 49980 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 |||||||| || || ||||||||||| || ||||||||||| || | ||||||| | Sbjct 49979 GGGGGATTCCCTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCGATCGTGTCGCTCGGCT 49920 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||||||||||||||| || || || |||||||| || |||||||| Sbjct 49919 CAACCTCGAGCGTGATCGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCAT 49868 Score = 163 bits (180), Expect = 7e-35 Identities = 176/232 (76%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || |||| || || ||||||| ||| ||||| ||||| || |||| Sbjct 51010 CATG-CCACCACGAAGTCGCAGCACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGT 50952 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | |||||||| ||||| || | |||||| || |||||||| |||||||| || | Sbjct 50951 CTGACAGCGTGCGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCAG 50892 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||| || || || || || ||||| || || || |||||||| || | ||| || | | Sbjct 50891 GTGGAATGCCCTCCTTGTCTTGGATCTTTGCCTTGACGTTTTCGATGGTATCACTGGGCT 50832 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | |||||||| ||||| ||||| |||||||||||||| || || || ||||| Sbjct 50831 CAACTTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTTACAAAGATTTGCAT 50780 Score = 145 bits (160), Expect = 2e-29 Identities = 172/232 (74%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||||||||| | || || | || | ||| || || ||||| || |||| Sbjct 50554 CATG-CCACCGCGGAGCCGGAGAACCAAGTGTAGGGTGGACTCCTTCTGGATGTTGTAGT 50496 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||| || ||||| | ||| || || |||||||||| |||||| ||| Sbjct 50495 CCGACAGGGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAACGCTGCTGATCCG 50436 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| ||||| || ||||||||||| ||||| || ||||| || | || || | | Sbjct 50435 GGGGGATCCCTTCCTTGTCCTGGATTTTGGCTTTGACATTTTCAATTGTGTCACTGGGCT 50376 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| |||||||| || || ||||| || || |||||||| |||||||| Sbjct 50375 CGACTTCCAGCGTGATGGTTTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 50324 Score = 145 bits (160), Expect = 2e-29 Identities = 172/232 (74%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || |||| || || ||||| | || ||||| ||||| || |||| Sbjct 50782 CATG-CCACCACGCAGTCGCAGCACCAGATGGAGGGTAGACTCTTTCTGGATGTTGTAGT 50724 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||| || ||||| | || || || || |||||||||||||| ||| Sbjct 50723 CCGACAGGGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCGG 50664 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || ||||| || ||||| |||||||| |||||||| || || | || || | | Sbjct 50663 GAGGAATACCTTCCTTGTCCTGAATTTTCGCCTTCACGTTCTCGATCGTGTCACTGGGCT 50604 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || ||||| ||||| |||||||||||||| ||||| |||||||| Sbjct 50603 CCACCTCCAGTGTGATAGTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCAT 50552 Score = 140 bits (154), Expect = 8e-28 Identities = 171/232 (74%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || ||||| || | || || || || | ||| || || || || || |||| Sbjct 49870 CATG-CCTCCGCGCAGCCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGT 49812 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| | |||||||||||||| | || || || |||||||||||||| || || Sbjct 49811 CGGACAAGGTGCGTCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGG 49752 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || || || || || || ||||||||||| || | ||||||| | Sbjct 49751 GCGGGATCCCCTCCTTGTCTTGAATCTTAGCCTTCACGTTTTCAATCGTGTCGCTCGGCT 49692 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||||||||| || ||||||||||| || |||||||| |||||||| Sbjct 49691 CCACCTCGAGCGTGATGGTTTTCCCGGTCAGGGTTTTGACGAAGATCTGCAT 49640 Score = 136 bits (150), Expect = 9e-27 Identities = 170/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| || | || || || |||| ||| ||||| |||||||| || | Sbjct 50326 CATG-CCACCGCGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATATTGTAAT 50268 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || || || || ||||| | || || || || |||||||||||||| ||| Sbjct 50267 CCGACAGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGG 50208 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || ||||| || ||||| ||||| || |||||||| || || | ||||| | | Sbjct 50207 GAGGAATGCCTTCCTTGTCCTGAATTTTGGCCTTCACGTTCTCGATTGTGTCGCTGGGCT 50148 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || ||||| ||||| ||||| || || |||||||| |||||||| Sbjct 50147 CCACCTCCAGTGTGATTGTCTTACCGGTGAGGGTTTTGACGAAGATCTGCAT 50096 Score = 136 bits (150), Expect = 9e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||||||||| | || || || || | ||| |||||| ||||| || ||||| | Sbjct 51235 TCCACCGCGGAGCCGCAGAACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCCGA 51176 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || || ||||| || | || || || || ||||| ||||||||||| || Sbjct 51175 CAGGGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGAGG 51116 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||| || |||||||| || |||||||||||||| || | || || | || || Sbjct 51115 AATCCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTTTCGATGGTGTCACTGGGCTCGAC 51056 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || ||||| ||||||||||| || || || || ||||| Sbjct 51055 CTCGAGAGTAATGGTCTTGCCGGTCAGAGTTTTTACAAAAATTTGCAT 51008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1174069778935576